{"id":"https://openalex.org/W3082056810","doi":"https://doi.org/10.1109/embc44109.2020.9176445","title":"Supervised Machine Learning Segmentation and Quantification of Gastric Pacemaker Cells","display_name":"Supervised Machine Learning Segmentation and Quantification of Gastric Pacemaker Cells","publication_year":2020,"publication_date":"2020-07-01","ids":{"openalex":"https://openalex.org/W3082056810","doi":"https://doi.org/10.1109/embc44109.2020.9176445","mag":"3082056810","pmid":"https://pubmed.ncbi.nlm.nih.gov/33018253"},"language":"en","primary_location":{"id":"doi:10.1109/embc44109.2020.9176445","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc44109.2020.9176445","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 42nd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/335625","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023862211","display_name":"Sue Ann Mah","orcid":"https://orcid.org/0000-0003-0835-1860"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Sue Ann Mah","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073924257","display_name":"Recep Avci","orcid":"https://orcid.org/0000-0003-2652-2192"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Recep Avci","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031958340","display_name":"Peng Du","orcid":"https://orcid.org/0000-0002-6913-7545"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Peng Du","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039995647","display_name":"Jean\u2010Marie Vanderwinden","orcid":"https://orcid.org/0000-0002-2193-5898"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Jean-Marie Vanderwinden","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036297582","display_name":"Leo K. Cheng","orcid":"https://orcid.org/0000-0003-2426-8987"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Leo K. Cheng","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I154130895"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2020","issue":null,"first_page":"1408","last_page":"1411"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11584","display_name":"Biochemical Analysis and Sensing Techniques","score":0.9782000184059143,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10276","display_name":"Helicobacter pylori-related gastroenterology studies","score":0.925599992275238,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interstitial-cell-of-cajal","display_name":"Interstitial cell of Cajal","score":0.7433876395225525},{"id":"https://openalex.org/keywords/antrum","display_name":"Antrum","score":0.6772605776786804},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6578025221824646},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6164268255233765},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5601885318756104},{"id":"https://openalex.org/keywords/myenteric-plexus","display_name":"Myenteric plexus","score":0.5293512940406799},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4819597899913788},{"id":"https://openalex.org/keywords/naive-bayes-classifier","display_name":"Naive Bayes classifier","score":0.47364509105682373},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4231218695640564},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.3370335102081299},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22694921493530273},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.2178870141506195},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21059072017669678},{"id":"https://openalex.org/keywords/stomach","display_name":"Stomach","score":0.18706756830215454},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.15308961272239685},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.11868518590927124}],"concepts":[{"id":"https://openalex.org/C201539569","wikidata":"https://www.wikidata.org/wiki/Q2596185","display_name":"Interstitial cell of Cajal","level":3,"score":0.7433876395225525},{"id":"https://openalex.org/C131253125","wikidata":"https://www.wikidata.org/wiki/Q609361","display_name":"Antrum","level":3,"score":0.6772605776786804},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6578025221824646},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6164268255233765},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5601885318756104},{"id":"https://openalex.org/C2776907353","wikidata":"https://www.wikidata.org/wiki/Q1890233","display_name":"Myenteric plexus","level":3,"score":0.5293512940406799},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4819597899913788},{"id":"https://openalex.org/C52001869","wikidata":"https://www.wikidata.org/wiki/Q812530","display_name":"Naive Bayes classifier","level":3,"score":0.47364509105682373},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4231218695640564},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.3370335102081299},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22694921493530273},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2178870141506195},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21059072017669678},{"id":"https://openalex.org/C2779422922","wikidata":"https://www.wikidata.org/wiki/Q1029907","display_name":"Stomach","level":2,"score":0.18706756830215454},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.15308961272239685},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.11868518590927124},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011706","descriptor_name":"Pyloric Antrum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011706","descriptor_name":"Pyloric Antrum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011706","descriptor_name":"Pyloric Antrum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1109/embc44109.2020.9176445","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc44109.2020.9176445","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 42nd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:33018253","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33018253","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:dipot.ulb.ac.be:2013/335625","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/335625","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2020","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/59692","is_oa":false,"landing_page_url":"https://hdl.handle.net/2292/59692","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Item"}],"best_oa_location":{"id":"pmh:oai:dipot.ulb.ac.be:2013/335625","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/335625","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2020","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W1968448387","https://openalex.org/W1980429806","https://openalex.org/W1983316185","https://openalex.org/W1991175004","https://openalex.org/W2003893456","https://openalex.org/W2079516415","https://openalex.org/W2100019522","https://openalex.org/W2102963388","https://openalex.org/W2129540753","https://openalex.org/W2133990480","https://openalex.org/W2141927860","https://openalex.org/W2143371283","https://openalex.org/W2155554612","https://openalex.org/W2160829471","https://openalex.org/W2171425687","https://openalex.org/W2522718901","https://openalex.org/W2601810315","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W2374292294","https://openalex.org/W2310051359","https://openalex.org/W2367402048","https://openalex.org/W3129885421","https://openalex.org/W2067936179","https://openalex.org/W4200435907","https://openalex.org/W2168777197","https://openalex.org/W3107562399","https://openalex.org/W2128327026","https://openalex.org/W2034196286"],"abstract_inverted_index":{"Interstitial":[0],"Cells":[1],"of":[2,24,70,171,218,247],"Cajal":[3],"(ICC)":[4],"are":[5],"specialized":[6],"pacemaker":[7],"cells":[8],"that":[9,95],"generate":[10],"and":[11,62,110,118,133,140,163,168,183,193,234,245],"actively":[12],"propagate":[13],"electrophysiological":[14],"events":[15],"called":[16],"slow":[17,232],"waves.":[18],"Slow":[19],"waves":[20,233],"regulate":[21],"the":[22,25,34,57,71,84,96,107,121,146,166,172,181,211,227,243],"motility":[23,45,250],"gastrointestinal":[26,44],"tract":[27],"necessary":[28],"for":[29,145,186,242],"digesting":[30],"food.":[31],"Degradation":[32],"in":[33,60,115,135,159,180,204],"ICC":[35,47,85,136,149,160,205,220,230],"network":[36,48,137,150,161],"structure":[37,49],"has":[38],"been":[39],"qualitatively":[40],"associated":[41],"to":[42,82],"several":[43],"disorders.":[46,251],"can":[50],"be":[51],"obtained":[52],"using":[53,102],"confocal":[54,89],"microscopy,":[55],"but":[56],"current":[58],"limitations":[59],"imaging":[61],"segmentation":[63],"techniques":[64,79,241],"have":[65],"hindered":[66],"an":[67],"accurate":[68],"representation":[69],"networks.":[72],"In":[73],"this":[74],"study,":[75],"supervised":[76],"machine":[77],"learning":[78],"were":[80,131,143],"applied":[81],"extract":[83],"networks":[86],"from":[87],"3D":[88],"microscopy":[90],"images.":[91],"The":[92],"results":[93],"showed":[94],"Fast":[97,122],"Random":[98,123],"Forest":[99,124],"classification":[100,113],"method":[101],"Trainable":[103],"WEKA":[104],"Segmentation":[105],"outperformed":[106],"Decision":[108],"Table":[109],"Na\u00efve":[111],"Bayes":[112],"methods":[114],"sensitivity,":[116],"accuracy,":[117],"F-measure.":[119],"Using":[120],"classifier,":[125],"12":[126],"gastric":[127],"antrum":[128,185,212],"tissue":[129],"blocks":[130],"segmented":[132],"variations":[134],"thickness,":[138],"density":[139,162,187],"process":[141,206],"width":[142,207],"quantified":[144],"myenteric":[147],"plexus":[148],"(the":[151],"primary":[152],"pacemakers).":[153],"Our":[154],"findings":[155],"demonstrated":[156],"regional":[157,219],"variation":[158,203],"thickness":[164,194],"along":[165],"circumferential":[167],"longitudinal":[169],"axis":[170],"mouse":[173],"antrum.":[174],"An":[175],"inverse":[176],"relationship":[177,228],"was":[178,208],"observed":[179,209],"distal":[182],"proximal":[184],"(proximal:":[188,195],"9.8\u00b14.0%":[189],"vs":[190,198],"distal:":[191,199],"7.6\u00b14.6%)":[192],"15\u00b13":[196],"\u03bcm":[197],"24\u00b110":[200],"\u03bcm).":[201],"Limited":[202],"throughout":[210],"(5\u00b11":[213],"\u03bcm).Clinical":[214],"Relevance-":[215],"Detailed":[216],"quantification":[217],"structural":[221],"properties":[222],"will":[223,239],"provide":[224],"insights":[225],"into":[226],"between":[229],"structure,":[231],"resultant":[235],"gut":[236],"motility.":[237],"This":[238],"improve":[240],"diagnosis":[244],"treatment":[246],"functional":[248],"GI":[249]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
