{"id":"https://openalex.org/W3082983056","doi":"https://doi.org/10.1109/embc44109.2020.9176392","title":"Continuum Based Bioelectrical Simulations using Structurally Realistic Gastrointestinal Pacemaker Cell Networks","display_name":"Continuum Based Bioelectrical Simulations using Structurally Realistic Gastrointestinal Pacemaker Cell Networks","publication_year":2020,"publication_date":"2020-07-01","ids":{"openalex":"https://openalex.org/W3082983056","doi":"https://doi.org/10.1109/embc44109.2020.9176392","mag":"3082983056","pmid":"https://pubmed.ncbi.nlm.nih.gov/33018510"},"language":"en","primary_location":{"id":"doi:10.1109/embc44109.2020.9176392","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc44109.2020.9176392","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 42nd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/313055","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073924257","display_name":"Recep Avci","orcid":"https://orcid.org/0000-0003-2652-2192"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Recep Avci","raw_affiliation_strings":["Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039076247","display_name":"Niranchan Paskaranandavadivel","orcid":"https://orcid.org/0000-0001-7377-8524"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Niranchan Paskaranandavadivel","raw_affiliation_strings":["Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031958340","display_name":"Peng Du","orcid":"https://orcid.org/0000-0002-6913-7545"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Peng Du","raw_affiliation_strings":["Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039995647","display_name":"Jean\u2010Marie Vanderwinden","orcid":"https://orcid.org/0000-0002-2193-5898"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jean-Marie Vanderwinden","raw_affiliation_strings":["Laboratory of Neurophysiology, Universite Libre de Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Neurophysiology, Universite Libre de Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036297582","display_name":"Leo K. Cheng","orcid":"https://orcid.org/0000-0003-2426-8987"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Leo K. Cheng","raw_affiliation_strings":["Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2020","issue":null,"first_page":"2483","last_page":"2486"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10919","display_name":"Neurological disorders and treatments","score":0.9598000049591064,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interstitial-cell-of-cajal","display_name":"Interstitial cell of Cajal","score":0.6660412549972534},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.593843936920166},{"id":"https://openalex.org/keywords/isotropy","display_name":"Isotropy","score":0.5097982287406921},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.46904832124710083},{"id":"https://openalex.org/keywords/biomedical-engineering","display_name":"Biomedical engineering","score":0.4356100559234619},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.40612366795539856},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3710075616836548},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3612864017486572},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.33216041326522827},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.32909688353538513},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24863377213478088},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22129827737808228},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.20964974164962769},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.16697880625724792},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14887109398841858}],"concepts":[{"id":"https://openalex.org/C201539569","wikidata":"https://www.wikidata.org/wiki/Q2596185","display_name":"Interstitial cell of Cajal","level":3,"score":0.6660412549972534},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.593843936920166},{"id":"https://openalex.org/C184050105","wikidata":"https://www.wikidata.org/wiki/Q273163","display_name":"Isotropy","level":2,"score":0.5097982287406921},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.46904832124710083},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.4356100559234619},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.40612366795539856},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3710075616836548},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3612864017486572},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.33216041326522827},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.32909688353538513},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24863377213478088},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22129827737808228},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.20964974164962769},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.16697880625724792},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14887109398841858},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009197","descriptor_name":"Myenteric Plexus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009197","descriptor_name":"Myenteric Plexus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009197","descriptor_name":"Myenteric Plexus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013368","descriptor_name":"Submucous Plexus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013368","descriptor_name":"Submucous Plexus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013368","descriptor_name":"Submucous Plexus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/embc44109.2020.9176392","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc44109.2020.9176392","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 42nd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:33018510","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33018510","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:dipot.ulb.ac.be:2013/313055","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/313055","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Conference proceedings, 2020-July","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:dipot.ulb.ac.be:2013/313055","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/313055","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Conference proceedings, 2020-July","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1515497217","https://openalex.org/W1978362426","https://openalex.org/W1980429806","https://openalex.org/W1991175004","https://openalex.org/W1991927948","https://openalex.org/W2003893456","https://openalex.org/W2024964399","https://openalex.org/W2030297634","https://openalex.org/W2049269388","https://openalex.org/W2064227044","https://openalex.org/W2080925139","https://openalex.org/W2100019522","https://openalex.org/W2109991971","https://openalex.org/W2140024282","https://openalex.org/W2160829471","https://openalex.org/W2167279371","https://openalex.org/W2272546316","https://openalex.org/W2295094524","https://openalex.org/W2567214527","https://openalex.org/W2754180377"],"related_works":["https://openalex.org/W1529087600","https://openalex.org/W1996593477","https://openalex.org/W2027636000","https://openalex.org/W3032603028","https://openalex.org/W2001976615","https://openalex.org/W3136440723","https://openalex.org/W2368108559","https://openalex.org/W83667566","https://openalex.org/W4302435351","https://openalex.org/W2745808456"],"abstract_inverted_index":{"Cellular":[0],"and":[1,34,63,93,175,183],"tissue":[2,71,94,119],"level":[3],"bioelectrical":[4,157],"activity":[5,158],"was":[6,73,112,121,192,216,232],"simulated":[7,122,156],"over":[8],"structurally":[9],"realistic":[10],"3D":[11,65,104],"interstitial":[12],"cell":[13],"of":[14,22,68,135,173,205,226],"Cajal":[15],"(ICC)":[16],"networks":[17],"reconstructed":[18],"from":[19,75,166],"confocal":[20,52],"images":[21,53,59],"a":[23,30,35,42,103,140,202,223],"wild":[24],"type":[25],"(WT)":[26],"mouse":[27,39,138,146,200,221],"model":[28,40],"with":[29,41,201,222],"normal":[31],"ICC":[32,44,48,70,83,99,133],"distribution":[33],"Spry4":[36],"knockout":[37],"(KO)":[38],"mild":[43],"hyperplasia.":[45],"First,":[46],"the":[47,51,57,64,69,76,80,91,98,109,118,124,132,136,144,167,181,190,195,198,208,211,214,219,236,240,244],"pixels":[49],"within":[50],"were":[54,60,101,178,247],"segmented.":[55],"Then,":[56],"segmented":[58],"visually":[61],"inspected":[62],"surface":[66],"mesh":[67,107],"network":[72,120,134],"created":[74],"90":[77],"slices":[78],"spanning":[79],"myenteric":[81],"plexus":[82],"network.":[84],"After":[85],"two":[86],"additional":[87],"concentric":[88],"meshes":[89],"(representing":[90],"non-ICC":[92],"bath":[95],"regions)":[96],"surrounding":[97],"region":[100],"added,":[102],"tetrahedral":[105],"volume":[106,142],"containing":[108],"three":[110],"regions":[111],"reconstructed.":[113],"The":[114,128,155,187],"electrical":[115],"propagation":[116,165,234],"through":[117],"using":[123],"bidomain":[125],"continuum":[126],"model.":[127],"results":[129],"showed":[130,162],"that":[131],"WT":[137,182,199],"had":[139],"smaller":[141],"than":[143,194],"KO":[145,184,220],"(0.008":[147],"vs":[148],"0.012":[149],"mm":[150],"<sup":[151],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[152],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">3</sup>":[153],").":[154],"for":[159,180,197,218],"both":[160,229],"mice":[161],"an":[163],"isotropic":[164],"initial":[168],"activation":[169],"region.":[170],"Mean":[171],"velocities":[172],"4.2\u00b11.5":[174],"4.1\u00b11.3":[176],"mm/s":[177],"reported":[179],"mice,":[185],"respectively.":[186],"velocity":[188,212],"in":[189,213,235],"x-direction":[191],"higher":[193,217],"y-direction":[196,215],"percent":[203,224],"difference":[204,225],"14.8%.":[206],"On":[207],"other":[209],"hand,":[210],"9.5%.":[227],"For":[228],"cases,":[230],"there":[231],"no":[233],"z-direction":[237],"as":[238],"all":[239],"solution":[241],"points":[242],"along":[243],"same":[245],"z-depth":[246],"simultaneously":[248],"activated.":[249]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
