{"id":"https://openalex.org/W3082717213","doi":"https://doi.org/10.1109/embc44109.2020.9175306","title":"Parametric exploration of cellular swelling in a computational model of cortical spreading depression","display_name":"Parametric exploration of cellular swelling in a computational model of cortical spreading depression","publication_year":2020,"publication_date":"2020-07-01","ids":{"openalex":"https://openalex.org/W3082717213","doi":"https://doi.org/10.1109/embc44109.2020.9175306","mag":"3082717213","pmid":"https://pubmed.ncbi.nlm.nih.gov/33018512"},"language":"en","primary_location":{"id":"doi:10.1109/embc44109.2020.9175306","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc44109.2020.9175306","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 42nd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065456836","display_name":"Barbara Genocchi","orcid":"https://orcid.org/0000-0002-7574-4835"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Barbara Genocchi","raw_affiliation_strings":["Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032272694","display_name":"Andr\u00e9 B. Cunha","orcid":"https://orcid.org/0009-0008-0137-5097"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Andre Cunha","raw_affiliation_strings":["Department of Physics, Electronics Section, University of Oslo, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Electronics Section, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020443049","display_name":"Soumil Jain","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Soumil Jain","raw_affiliation_strings":["Bioengineering, University of California, San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering, University of California, San Diego, USA","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050747402","display_name":"Jari Hyttinen","orcid":"https://orcid.org/0000-0003-1850-3055"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jari Hyttinen","raw_affiliation_strings":["Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039161334","display_name":"Kerstin Lenk","orcid":"https://orcid.org/0000-0002-8329-1127"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Kerstin Lenk","raw_affiliation_strings":["Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057441296","display_name":"Ada J. Ellingsrud","orcid":"https://orcid.org/0000-0002-8600-578X"},"institutions":[{"id":"https://openalex.org/I2799829267","display_name":"Simula Research Laboratory","ror":"https://ror.org/00vn06n10","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2799829267"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ada Johanne Ellingsrud","raw_affiliation_strings":["Department of Scientific Computing, Simula Research Laboratory, Fornebu, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Scientific Computing, Simula Research Laboratory, Fornebu, Norway","institution_ids":["https://openalex.org/I2799829267"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4444,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.5884903,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2020","issue":null,"first_page":"2491","last_page":"2495"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9736999869346619,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9736999869346619,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10919","display_name":"Neurological disorders and treatments","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10608","display_name":"Neurogenesis and neuroplasticity mechanisms","score":0.9696000218391418,"subfield":{"id":"https://openalex.org/subfields/2806","display_name":"Developmental Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.648652195930481},{"id":"https://openalex.org/keywords/swelling","display_name":"Swelling","score":0.6267513036727905},{"id":"https://openalex.org/keywords/cortical-spreading-depression","display_name":"Cortical spreading depression","score":0.5642422437667847},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4987308979034424},{"id":"https://openalex.org/keywords/depression","display_name":"Depression (economics)","score":0.45359039306640625},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.29435619711875916},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1414363980293274},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.11884847283363342},{"id":"https://openalex.org/keywords/composite-material","display_name":"Composite material","score":0.11606758832931519}],"concepts":[{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.648652195930481},{"id":"https://openalex.org/C2778540859","wikidata":"https://www.wikidata.org/wiki/Q152234","display_name":"Swelling","level":2,"score":0.6267513036727905},{"id":"https://openalex.org/C122356138","wikidata":"https://www.wikidata.org/wiki/Q461576","display_name":"Cortical spreading depression","level":3,"score":0.5642422437667847},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4987308979034424},{"id":"https://openalex.org/C2776867660","wikidata":"https://www.wikidata.org/wiki/Q1814941","display_name":"Depression (economics)","level":2,"score":0.45359039306640625},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.29435619711875916},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1414363980293274},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.11884847283363342},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.11606758832931519},{"id":"https://openalex.org/C139719470","wikidata":"https://www.wikidata.org/wiki/Q39680","display_name":"Macroeconomics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2778541695","wikidata":"https://www.wikidata.org/wiki/Q133823","display_name":"Migraine","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000254","descriptor_name":"Sodium-Potassium-Exchanging ATPase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000254","descriptor_name":"Sodium-Potassium-Exchanging ATPase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000254","descriptor_name":"Sodium-Potassium-Exchanging ATPase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001253","descriptor_name":"Astrocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001253","descriptor_name":"Astrocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001253","descriptor_name":"Astrocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013181","descriptor_name":"Cortical Spreading Depression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013181","descriptor_name":"Cortical Spreading Depression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013181","descriptor_name":"Cortical Spreading Depression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051401","descriptor_name":"Aquaporin 4","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051401","descriptor_name":"Aquaporin 4","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051401","descriptor_name":"Aquaporin 4","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc44109.2020.9175306","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc44109.2020.9175306","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 42nd Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:33018512","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33018512","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Clean water and sanitation","score":0.699999988079071,"id":"https://metadata.un.org/sdg/6"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1490831218","https://openalex.org/W1991506895","https://openalex.org/W2026613673","https://openalex.org/W2036713439","https://openalex.org/W2080524941","https://openalex.org/W2096181241","https://openalex.org/W2115558652","https://openalex.org/W2117088742","https://openalex.org/W2300320813","https://openalex.org/W2413144892","https://openalex.org/W2464831028","https://openalex.org/W2504685422","https://openalex.org/W2531193085","https://openalex.org/W2593787260","https://openalex.org/W2725138529","https://openalex.org/W2777525962","https://openalex.org/W2890638420","https://openalex.org/W2963244362","https://openalex.org/W4253675965","https://openalex.org/W6813755480"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2371502604","https://openalex.org/W71363804","https://openalex.org/W1996860832","https://openalex.org/W2992454104","https://openalex.org/W1973945339","https://openalex.org/W2030835807","https://openalex.org/W1966003326","https://openalex.org/W2003526108"],"abstract_inverted_index":{"Cortical":[0],"spreading":[1],"depression":[2],"(CSD)":[3],"is":[4,264],"a":[5,97,114,123,130,206,211,281,289],"slowly":[6],"propagating":[7],"wave":[8,62,92,250],"of":[9,11,75,133,292],"depolarization":[10],"brain":[12,19],"cells,":[13],"followed":[14],"by":[15],"temporary":[16],"silenced":[17],"electrical":[18],"activity.":[20],"Major":[21],"structural":[22],"changes":[23],"during":[24,82,143],"CSD":[25,61,83,91,144],"are":[26,43,120],"linked":[27],"to":[28,161,247],"neuronal":[29,213,222,278],"and":[30,54,77,84,109,127,129,165,182,210,230,252,280,298],"possibly":[31],"glial":[32,50,80],"swelling.":[33],"However,":[34],"basic":[35],"questions":[36,45],"still":[37],"remain":[38],"unanswered.":[39],"In":[40],"particular,":[41],"there":[42],"open":[44],"regarding":[46],"whether":[47],"neurons":[48,76,229],"or":[49],"cells":[51],"swell":[52],"more,":[53],"how":[55,69,85,304],"the":[56,60,73,86,90,105,111,134,153,158,167,179,185,198,202,217,225,233,244,261,267,274,284],"cellular":[57,296],"swelling":[58,74,88,142,209,214,226,253,297],"affects":[59],"propagation.In":[63],"this":[64],"study,":[65],"we":[66],"computationally":[67],"explore":[68],"different":[70],"parameters":[71],"affect":[72],"astrocytes":[78,137,203,245,275,293,307],"(star-shaped":[79],"cells)":[81],"cell":[87,141],"alters":[89],"spatial":[93],"distribution.":[94],"We":[95,139],"apply":[96],"homogenized":[98],"mathematical":[99],"model":[100,135],"that":[101,196],"describes":[102],"electrodiffusion":[103],"in":[104,145,152,178,191,201,205,216,227,243,254,273,277,283,294,306],"intraand":[106],"extracellular":[107],"space,":[108],"discretize":[110],"equations":[112],"using":[113],"finite":[115],"element":[116],"method.":[117],"The":[118],"simulations":[119],"run":[121],"with":[122,136],"two-compartment":[124],"(extracellular":[125],"space":[126],"neurons)":[128],"three-compartment":[131],"version":[132],"added.":[138],"consider":[140],"four":[146],"scenarios:":[147],"(A)":[148],"incorporating":[149],"aquaporin-4":[150],"channels":[151,190,272],"astrocytic":[154,180,208],"membrane,":[155],"(B)":[156],"increasing":[157,166,197],"neuron/astrocyte":[159],"ratio":[160],"2:1,":[162],"(C)":[163],"blocking":[164,184],"Na":[168,234],"<sup":[169,173,187,235,239,269],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[170,174,188,236,240,270],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">+</sup>":[171,175,237,241],"/K":[172,238],"-ATPase":[176,242],"rate":[177,263],"compartment,":[181],"(D)":[183],"Cl":[186,268],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">-</sup>":[189,271],"astrocytes.":[192,231,285],"Our":[193,286],"results":[194,204,276,287],"show":[195],"water":[199],"permeability":[200],"higher":[207],"lower":[212],"than":[215],"default":[218],"case.":[219],"Further,":[220],"elevated":[221],"density":[223],"increases":[224],"both":[228,255],"Blocking":[232,266],"leads":[246],"an":[248],"increased":[249],"width":[251],"compartments,":[256],"which":[257],"instead":[258],"decreases":[259],"when":[260],"pump":[262],"raised.":[265],"swelling,":[279],"shrinkage":[282],"suggest":[288],"supporting":[290],"role":[291],"preventing":[295],"CSD,":[299],"as":[300,302],"well":[301],"highlighting":[303],"dysfunctions":[305],"might":[308],"elicit":[309],"CSD.":[310]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
