{"id":"https://openalex.org/W4389542973","doi":"https://doi.org/10.1109/embc40787.2023.10340720","title":"Atrous spatial pyramid pooling and multi-image data fusion for smooth muscle segmentation in upper gastrointestinal sphincters *","display_name":"Atrous spatial pyramid pooling and multi-image data fusion for smooth muscle segmentation in upper gastrointestinal sphincters *","publication_year":2023,"publication_date":"2023-07-24","ids":{"openalex":"https://openalex.org/W4389542973","doi":"https://doi.org/10.1109/embc40787.2023.10340720","pmid":"https://pubmed.ncbi.nlm.nih.gov/38083614"},"language":"en","primary_location":{"id":"doi:10.1109/embc40787.2023.10340720","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/embc40787.2023.10340720","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 45th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092516318","display_name":"Savindi Wijenayaka","orcid":null},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Savindi Wijenayaka","raw_affiliation_strings":["the University of Auckland,Auckland Bioengineering Institute,New Zealand","Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"the University of Auckland,Auckland Bioengineering Institute,New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021269128","display_name":"Alys R. Clark","orcid":"https://orcid.org/0000-0001-5908-2862"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Alys R. Clark","raw_affiliation_strings":["the University of Auckland,Auckland Bioengineering Institute,New Zealand","Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"the University of Auckland,Auckland Bioengineering Institute,New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073924257","display_name":"Recep Avci","orcid":"https://orcid.org/0000-0003-2652-2192"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Recep Avci","raw_affiliation_strings":["the University of Auckland,Auckland Bioengineering Institute,New Zealand","Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"the University of Auckland,Auckland Bioengineering Institute,New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036297582","display_name":"Leo K. Cheng","orcid":"https://orcid.org/0000-0003-2426-8987"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Leo K. Cheng","raw_affiliation_strings":["the University of Auckland,Auckland Bioengineering Institute,New Zealand","Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"the University of Auckland,Auckland Bioengineering Institute,New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031958340","display_name":"Peng Du","orcid":"https://orcid.org/0000-0002-6913-7545"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Peng Du","raw_affiliation_strings":["the University of Auckland,Auckland Bioengineering Institute,New Zealand","Auckland Bioengineering Institute, the University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"the University of Auckland,Auckland Bioengineering Institute,New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Auckland Bioengineering Institute, the University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I154130895"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"abs/1606.00915","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11358","display_name":"Dysphagia Assessment and Management","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/3616","display_name":"Speech and Hearing"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11358","display_name":"Dysphagia Assessment and Management","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/3616","display_name":"Speech and Hearing"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7042133808135986},{"id":"https://openalex.org/keywords/pyramid","display_name":"Pyramid (geometry)","score":0.6802012324333191},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6792015433311462},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6069221496582031},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5317012071609497},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.524346649646759},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.45593684911727905},{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.42665377259254456},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23368367552757263}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7042133808135986},{"id":"https://openalex.org/C142575187","wikidata":"https://www.wikidata.org/wiki/Q3358290","display_name":"Pyramid (geometry)","level":2,"score":0.6802012324333191},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6792015433311462},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6069221496582031},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5317012071609497},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.524346649646759},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.45593684911727905},{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.42665377259254456},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23368367552757263},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011712","descriptor_name":"Pyramidal Tracts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011712","descriptor_name":"Pyramidal Tracts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011712","descriptor_name":"Pyramidal Tracts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011712","descriptor_name":"Pyramidal Tracts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011712","descriptor_name":"Pyramidal Tracts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055114","descriptor_name":"X-Ray Microtomography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055114","descriptor_name":"X-Ray Microtomography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055114","descriptor_name":"X-Ray Microtomography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055114","descriptor_name":"X-Ray Microtomography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055114","descriptor_name":"X-Ray Microtomography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc40787.2023.10340720","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/embc40787.2023.10340720","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 45th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:38083614","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38083614","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.6800000071525574,"display_name":"Zero hunger"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1490038791","https://openalex.org/W1600667552","https://openalex.org/W1995176786","https://openalex.org/W2061346147","https://openalex.org/W2412782625","https://openalex.org/W2766868741","https://openalex.org/W2913637767","https://openalex.org/W3125832420","https://openalex.org/W3207213272","https://openalex.org/W3212645627","https://openalex.org/W6715287400"],"related_works":["https://openalex.org/W2953234277","https://openalex.org/W2022849497","https://openalex.org/W3081299480","https://openalex.org/W2407190427","https://openalex.org/W2907584218","https://openalex.org/W2919210741","https://openalex.org/W3002446410","https://openalex.org/W4390224712","https://openalex.org/W4322096758","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Gastrointestinal":[0],"(GI)":[1],"sphincters":[2,19,36,171],"provide":[3],"critical":[4],"roles":[5],"in":[6,79,160],"regulating":[7],"the":[8,13,32,106,114,129,138,151],"transport":[9],"of":[10,17,25,34,84,108,131,167,176],"contents":[11],"along":[12],"GI":[14,18,35,170],"tract.":[15],"Dysfunctions":[16],"are":[20,37],"associated":[21],"with":[22],"a":[23,68,87,100],"range":[24],"major":[26],"digestive":[27],"disorders.":[28],"Despite":[29],"their":[30],"importance,":[31],"microstructures":[33],"not":[38],"well":[39],"investigated.":[40],"While":[41],"micro-computed":[42],"tomography":[43],"(\u03bc-CT)":[44],"provides":[45],"detailed":[46,173],"3D":[47],"images,":[48],"conventional":[49,155],"segmentation":[50,69,120,130,166],"methods":[51],"rely":[52],"on":[53],"manual":[54],"correction,":[55],"which":[56,77],"is":[57],"both":[58],"time-consuming":[59],"and":[60,96,124,141,146],"prone":[61],"to":[62,112,154],"human":[63,168],"error.":[64],"This":[65],"study":[66,162],"proposes":[67],"method":[70],"using":[71],"atrous":[72],"spatial":[73],"pyramid":[74],"pooling":[75],"(ASPP),":[76],"helps":[78],"capturing":[80],"different":[81],"effective":[82],"fields":[83],"view":[85],"from":[86],"given":[88,101],"input":[89],"feature":[90],"map,":[91],"thereof":[92],"providing":[93],"finer":[94],"local":[95],"global":[97],"information":[98],"for":[99,172],"pixel.":[102],"Additionally,":[103],"we":[104],"explored":[105],"use":[107],"multi-species":[109,125],"data":[110,126],"fusion":[111,127],"make":[113],"model":[115],"more":[116],"generalized.":[117],"The":[118],"proposed":[119],"network":[121],"incorporating":[122],"ASPP":[123],"improved":[128],"sphincter":[132],"muscle":[133],"images.":[134],"Specifically,":[135],"it":[136],"increased":[137],"dice":[139],"score":[140],"Jaccard":[142],"index":[143],"by":[144],"3.7%":[145],"5.8%,":[147],"respectively,":[148],"while":[149],"reducing":[150],"variance":[152],"compared":[153],"methods.Clinical":[156],"relevance-":[157],"Techniques":[158],"developed":[159],"this":[161],"will":[163],"inform":[164],"\u03bc-CT":[165],"upper":[169],"structural":[174],"analysis":[175],"muscular":[177],"dysfunction.":[178]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
