{"id":"https://openalex.org/W4389537815","doi":"https://doi.org/10.1109/embc40787.2023.10340497","title":"Cellsketch: Simplified Cell Representation for Label-free Cell and Nuclei Segmentation","display_name":"Cellsketch: Simplified Cell Representation for Label-free Cell and Nuclei Segmentation","publication_year":2023,"publication_date":"2023-07-24","ids":{"openalex":"https://openalex.org/W4389537815","doi":"https://doi.org/10.1109/embc40787.2023.10340497","pmid":"https://pubmed.ncbi.nlm.nih.gov/38083673"},"language":"en","primary_location":{"id":"doi:10.1109/embc40787.2023.10340497","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/embc40787.2023.10340497","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 45th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084793909","display_name":"Ira Novianti","orcid":"https://orcid.org/0000-0001-5651-3647"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ira Novianti","raw_affiliation_strings":["Tohoku University,Graduate School of Life Sciences,Sendai, Miyagi,Japan,980-8577"],"affiliations":[{"raw_affiliation_string":"Tohoku University,Graduate School of Life Sciences,Sendai, Miyagi,Japan,980-8577","institution_ids":["https://openalex.org/I201537933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081279468","display_name":"Shin Mizukami","orcid":"https://orcid.org/0000-0002-2292-8606"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shin Mizukami","raw_affiliation_strings":["Tohoku University,Graduate School of Life Sciences,Sendai, Miyagi,Japan,980-8577","Institue of Multidisciplinary Research of Advanced Materials, Tohoku University, Sendai, Miyagi, Japan"],"affiliations":[{"raw_affiliation_string":"Tohoku University,Graduate School of Life Sciences,Sendai, Miyagi,Japan,980-8577","institution_ids":["https://openalex.org/I201537933"]},{"raw_affiliation_string":"Institue of Multidisciplinary Research of Advanced Materials, Tohoku University, Sendai, Miyagi, Japan","institution_ids":["https://openalex.org/I201537933"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5084793909"],"corresponding_institution_ids":["https://openalex.org/I201537933"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13291809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2023","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7655758857727051},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7215292453765869},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6998845934867859},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5721873044967651},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5676746964454651},{"id":"https://openalex.org/keywords/rgb-color-model","display_name":"RGB color model","score":0.5423934459686279},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.5205596089363098},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5178266167640686},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5017361640930176},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.49562251567840576},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.4573296010494232},{"id":"https://openalex.org/keywords/differential-interference-contrast-microscopy","display_name":"Differential interference contrast microscopy","score":0.4348369538784027},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.11695683002471924},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.0862557590007782},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08192402124404907},{"id":"https://openalex.org/keywords/power","display_name":"Power (physics)","score":0.06552848219871521}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7655758857727051},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7215292453765869},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6998845934867859},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5721873044967651},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5676746964454651},{"id":"https://openalex.org/C82990744","wikidata":"https://www.wikidata.org/wiki/Q166194","display_name":"RGB color model","level":2,"score":0.5423934459686279},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.5205596089363098},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5178266167640686},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5017361640930176},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.49562251567840576},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.4573296010494232},{"id":"https://openalex.org/C109986877","wikidata":"https://www.wikidata.org/wiki/Q899173","display_name":"Differential interference contrast microscopy","level":3,"score":0.4348369538784027},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.11695683002471924},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0862557590007782},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08192402124404907},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.06552848219871521},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc40787.2023.10340497","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/embc40787.2023.10340497","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 45th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:38083673","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38083673","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W2015159529","https://openalex.org/W2339754110","https://openalex.org/W2945333368","https://openalex.org/W2953094064","https://openalex.org/W2953421783","https://openalex.org/W2963073614","https://openalex.org/W2963150697","https://openalex.org/W2963194837","https://openalex.org/W3111521801"],"related_works":["https://openalex.org/W2185902295","https://openalex.org/W2103507220","https://openalex.org/W3144569342","https://openalex.org/W2945274617","https://openalex.org/W4313052709","https://openalex.org/W2022929107","https://openalex.org/W2055202857","https://openalex.org/W80586315","https://openalex.org/W4205800335","https://openalex.org/W2758994127"],"abstract_inverted_index":{"This":[0,100],"paper":[1],"presents":[2],"a":[3,49,54,86],"novel":[4],"technique":[5],"for":[6,85,89],"cell":[7,25,66,90],"segmentation,":[8],"named":[9],"\"Cellsketch,\"":[10],"which":[11],"generates":[12],"an":[13],"RGB":[14,44],"mask":[15,45],"containing":[16],"simplified":[17],"representations":[18],"of":[19,39,56],"cells":[20,40,105],"(including":[21],"nuclei,":[22],"whole-cell,":[23],"and":[24,30,41,59,67,82,106],"boundaries)":[26],"from":[27,70,108],"microscopic":[28],"images,":[29],"applies":[31],"the":[32],"watershed":[33],"algorithm":[34,88],"to":[35],"produce":[36],"segmentation":[37,69],"masks":[38],"nuclei.":[42],"The":[43,62,92],"is":[46,94],"generated":[47],"using":[48,76],"generator":[50],"model":[51],"trained":[52],"with":[53],"combination":[55],"L1":[57],"loss":[58],"adversarial":[60],"loss.":[61],"method":[63,101],"achieved":[64],"accurate":[65],"nuclei":[68,107],"differential":[71],"interference":[72],"contrast":[73],"(DIC)":[74],"images":[75],"only":[77],"automatically":[78],"annotated":[79],"training":[80],"data":[81],"shows":[83],"potential":[84],"generalizable":[87],"segmentation.":[91],"code":[93],"freely":[95],"available":[96],"at:":[97],"https://github.com/iranovianti/cellsketchClinical":[98],"Relevance-":[99],"simultaneously":[102],"detects":[103],"individual":[104],"DIC":[109],"images.":[110]},"counts_by_year":[],"updated_date":"2025-12-21T23:12:01.093139","created_date":"2025-10-10T00:00:00"}
