{"id":"https://openalex.org/W4389577031","doi":"https://doi.org/10.1109/embc40787.2023.10340304","title":"Construction of Shape Atlas for Abdominal Organs using Three-Dimensional Mesh Variational Autoencoder","display_name":"Construction of Shape Atlas for Abdominal Organs using Three-Dimensional Mesh Variational Autoencoder","publication_year":2023,"publication_date":"2023-07-24","ids":{"openalex":"https://openalex.org/W4389577031","doi":"https://doi.org/10.1109/embc40787.2023.10340304","pmid":"https://pubmed.ncbi.nlm.nih.gov/38083713"},"language":"en","primary_location":{"id":"doi:10.1109/embc40787.2023.10340304","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/embc40787.2023.10340304","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 45th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/286882/1/EMBC40787.2023.10340304.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039226206","display_name":"Ryuichi Umehara","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ryuichi Umehara","raw_affiliation_strings":["Kyoto University,Graduate School of Informatics,Kyoto,Japan,606-8501"],"affiliations":[{"raw_affiliation_string":"Kyoto University,Graduate School of Informatics,Kyoto,Japan,606-8501","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091878958","display_name":"Mitsuhiro Nakamura","orcid":"https://orcid.org/0000-0002-6406-2097"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Mitsuhiro Nakamura","raw_affiliation_strings":["Kyoto University,Graduate School of Medicine,Kyoto,Japan,606-8501"],"affiliations":[{"raw_affiliation_string":"Kyoto University,Graduate School of Medicine,Kyoto,Japan,606-8501","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076496418","display_name":"Megumi Nakao","orcid":"https://orcid.org/0000-0002-5508-4366"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Megumi Nakao","raw_affiliation_strings":["Kyoto University,Graduate School of Medicine,Kyoto,Japan,606-8501"],"affiliations":[{"raw_affiliation_string":"Kyoto University,Graduate School of Medicine,Kyoto,Japan,606-8501","institution_ids":["https://openalex.org/I22299242"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5039226206"],"corresponding_institution_ids":["https://openalex.org/I22299242"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18868728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2023","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.8462585210800171},{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.7727193236351013},{"id":"https://openalex.org/keywords/polygon-mesh","display_name":"Polygon mesh","score":0.7623580694198608},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5890449285507202},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.581811785697937},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5629528164863586},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.5546650290489197},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.546457827091217},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.5242850184440613},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.391720175743103},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35735833644866943},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3314189016819},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3068537712097168},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.1731794774532318},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.1315949559211731},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.11701422929763794},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07820549607276917},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07189622521400452}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.8462585210800171},{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.7727193236351013},{"id":"https://openalex.org/C31487907","wikidata":"https://www.wikidata.org/wiki/Q1154597","display_name":"Polygon mesh","level":2,"score":0.7623580694198608},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5890449285507202},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.581811785697937},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5629528164863586},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.5546650290489197},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.546457827091217},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.5242850184440613},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.391720175743103},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35735833644866943},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3314189016819},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3068537712097168},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.1731794774532318},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.1315949559211731},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.11701422929763794},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07820549607276917},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07189622521400452},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/embc40787.2023.10340304","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/embc40787.2023.10340304","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 45th Annual International Conference of the IEEE Engineering in Medicine &amp; Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:38083713","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38083713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:repository.kulib.kyoto-u.ac.jp:2433/286882","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/286882","pdf_url":"https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/286882/1/EMBC40787.2023.10340304.pdf","source":{"id":"https://openalex.org/S4306401454","display_name":"Kyoto University Research Information Repository (Kyoto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I22299242","host_organization_name":"Kyoto University","host_organization_lineage":["https://openalex.org/I22299242"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"conference paper"}],"best_oa_location":{"id":"pmh:oai:repository.kulib.kyoto-u.ac.jp:2433/286882","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/286882","pdf_url":"https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/286882/1/EMBC40787.2023.10340304.pdf","source":{"id":"https://openalex.org/S4306401454","display_name":"Kyoto University Research Information Repository (Kyoto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I22299242","host_organization_name":"Kyoto University","host_organization_lineage":["https://openalex.org/I22299242"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"conference paper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389577031.pdf","grobid_xml":"https://content.openalex.org/works/W4389577031.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1988289833","https://openalex.org/W2016772237","https://openalex.org/W2104276184","https://openalex.org/W2470891123","https://openalex.org/W2731879134","https://openalex.org/W2753858305","https://openalex.org/W2962928839","https://openalex.org/W2990414539","https://openalex.org/W3037732309","https://openalex.org/W3091772648","https://openalex.org/W4288391456"],"related_works":["https://openalex.org/W4362597605","https://openalex.org/W1574414179","https://openalex.org/W4297676672","https://openalex.org/W3009056573","https://openalex.org/W2922073769","https://openalex.org/W4281702477","https://openalex.org/W2490526372","https://openalex.org/W4376166922","https://openalex.org/W4289763776","https://openalex.org/W2810330923"],"abstract_inverted_index":{"A":[0],"model":[1,112],"that":[2,97,121],"represents":[3],"the":[4,67,110,127,139],"shapes":[5,130],"and":[6,33,43,58,87,103,119,129],"positions":[7,128],"of":[8,17,27,69,75,116,135,142],"organs":[9,39],"or":[10],"skeletal":[11],"structures":[12],"with":[13,84,105,131],"a":[14,24,81,93],"small":[15],"number":[16],"parameters":[18],"may":[19],"be":[20],"expected":[21],"to":[22,53,63,79,125],"have":[23],"wide":[25],"range":[26],"clinical":[28],"applications,":[29],"such":[30],"as":[31],"radiotherapy":[32],"surgical":[34],"guidance.":[35],"However,":[36],"because":[37],"soft":[38],"vary":[40],"in":[41],"shape":[42,82,102],"position":[44,104],"between":[45],"patients,":[46],"it":[47,122],"is":[48,71],"difficult":[49],"for":[50,113,138],"linear":[51],"models":[52,60],"reconstruct":[54,99,126],"locally":[55],"variable":[56],"shapes,":[57],"nonlinear":[59,101],"are":[61],"prone":[62],"overfitting,":[64],"particularly":[65],"when":[66],"quantity":[68],"data":[70,141],"small.":[72],"The":[73],"aim":[74],"this":[76],"study":[77],"was":[78,123],"construct":[80],"atlas":[83],"high":[85,106],"accuracy":[86,134],"good":[88],"generalization":[89],"performance.":[90],"We":[91,108],"designed":[92],"mesh":[94],"variational":[95],"autoencoder":[96],"can":[98],"both":[100],"accuracy.":[107],"validated":[109],"trained":[111],"liver":[114],"meshes":[115],"125":[117],"cases,":[118],"found":[120],"possible":[124],"an":[132],"average":[133],"4.3":[136],"mm":[137],"test":[140],"19":[143],"cases.":[144]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
