{"id":"https://openalex.org/W2979589633","doi":"https://doi.org/10.1109/embc.2019.8857392","title":"An End-to-End Deep Learning Pipeline for Emphysema Quantification Using Multi-label Learning","display_name":"An End-to-End Deep Learning Pipeline for Emphysema Quantification Using Multi-label Learning","publication_year":2019,"publication_date":"2019-07-01","ids":{"openalex":"https://openalex.org/W2979589633","doi":"https://doi.org/10.1109/embc.2019.8857392","mag":"2979589633","pmid":"https://pubmed.ncbi.nlm.nih.gov/31946046"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2019.8857392","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2019.8857392","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113637403","display_name":"Mohammadreza Negahdar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mohammadreza Negahdar","raw_affiliation_strings":["IBM Research \u2013 Almaden, San Jose, CA, USA"],"affiliations":[{"raw_affiliation_string":"IBM Research \u2013 Almaden, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060853544","display_name":"Adam Coy","orcid":"https://orcid.org/0000-0002-0520-7612"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Coy","raw_affiliation_strings":["Department of Radiology and Biomedical Imaging, University of California San Francisco (UCSF), San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology and Biomedical Imaging, University of California San Francisco (UCSF), San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020179679","display_name":"David Beymer","orcid":"https://orcid.org/0000-0002-9491-4967"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Beymer","raw_affiliation_strings":["IBM Research \u2013 Almaden, San Jose, CA, USA"],"affiliations":[{"raw_affiliation_string":"IBM Research \u2013 Almaden, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5113637403"],"corresponding_institution_ids":["https://openalex.org/I4210085935"],"apc_list":null,"apc_paid":null,"fwci":0.8645,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.76923657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"57","issue":null,"first_page":"929","last_page":"932"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10143","display_name":"Chronic Obstructive Pulmonary Disease (COPD) Research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10143","display_name":"Chronic Obstructive Pulmonary Disease (COPD) Research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6995722055435181},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.689963698387146},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.6700714826583862},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.6273837685585022},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5345662236213684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5321231484413147},{"id":"https://openalex.org/keywords/differential-diagnosis","display_name":"Differential diagnosis","score":0.521743655204773},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.47202128171920776},{"id":"https://openalex.org/keywords/pulmonary-fibrosis","display_name":"Pulmonary fibrosis","score":0.4411028027534485},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4074839949607849},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.319908082485199},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.08368030190467834}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6995722055435181},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.689963698387146},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.6700714826583862},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.6273837685585022},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5345662236213684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5321231484413147},{"id":"https://openalex.org/C2780801072","wikidata":"https://www.wikidata.org/wiki/Q837512","display_name":"Differential diagnosis","level":2,"score":0.521743655204773},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.47202128171920776},{"id":"https://openalex.org/C2781244666","wikidata":"https://www.wikidata.org/wiki/Q32446","display_name":"Pulmonary fibrosis","level":3,"score":0.4411028027534485},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4074839949607849},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.319908082485199},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.08368030190467834},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011656","descriptor_name":"Pulmonary Emphysema","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011656","descriptor_name":"Pulmonary Emphysema","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011656","descriptor_name":"Pulmonary Emphysema","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2019.8857392","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2019.8857392","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:31946046","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31946046","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W774466653","https://openalex.org/W2014070789","https://openalex.org/W2029859938","https://openalex.org/W2047195934","https://openalex.org/W2097117768","https://openalex.org/W2099707769","https://openalex.org/W2112164027","https://openalex.org/W2132826329","https://openalex.org/W2163605009","https://openalex.org/W2194775991","https://openalex.org/W2238798713","https://openalex.org/W2302770900","https://openalex.org/W2323929895","https://openalex.org/W2467126091","https://openalex.org/W2560476520","https://openalex.org/W2793818481","https://openalex.org/W2805105351","https://openalex.org/W2807460624","https://openalex.org/W2922471383","https://openalex.org/W2962914239","https://openalex.org/W2963446712"],"related_works":["https://openalex.org/W4249377076","https://openalex.org/W4210389441","https://openalex.org/W4320920036","https://openalex.org/W4206833064","https://openalex.org/W2318612416","https://openalex.org/W3210350521","https://openalex.org/W1968243433","https://openalex.org/W4210622726","https://openalex.org/W4392655718","https://openalex.org/W2256864649"],"abstract_inverted_index":{"We":[0],"propose":[1],"and":[2,28,75,109,116,143],"validate":[3],"an":[4],"end-to-end":[5,130],"deep":[6,41,131],"learning":[7,11,42,63,132],"pipeline":[8,38,133,157],"employing":[9],"multi-label":[10,62],"as":[12,22,24],"a":[13,48,61],"tool":[14],"for":[15,67,73,134,140],"creating":[16],"differential":[17,71,98,138],"diagnoses":[18,72,99,139],"of":[19,30,57,123,137,146,154],"lung":[20,45,55,88,96,111,118,141],"pathology":[21],"well":[23],"quantifying":[25],"the":[26,53,68,81,121,128,135,144,152,155],"extent":[27],"distribution":[29],"emphysema":[31,74,82],"in":[32,94],"chest":[33],"CT":[34,58],"images.":[35,59],"The":[36,86],"proposed":[37,156],"first":[39,129],"employs":[40],"based":[43],"volumetric":[44],"segmentation":[46],"using":[47],"3D":[49],"CNN":[50],"to":[51,78],"extract":[52],"entire":[54],"out":[56],"Then,":[60],"model":[64],"is":[65,127],"exploited":[66],"classification":[69],"creation":[70,136],"then":[76],"used":[77],"correlate":[79],"with":[80],"diagnosed":[83],"by":[84],"radiologists.":[85],"five":[87],"tissue":[89],"patterns":[90],"which":[91],"are":[92],"involved":[93],"most":[95],"disease":[97,142],"were":[100],"classified":[101],"as:":[102],"ground":[103],"glass,":[104],"fibrosis,":[105],"micronodules":[106],"(random,":[107],"perilymphatic":[108],"centrilobular":[110],"nodules),":[112],"normal":[113],"appearing":[114],"lung,":[115],"emphysematous":[117],"tissue.":[119],"To":[120],"best":[122],"our":[124],"knowledge,":[125],"this":[126],"quantification":[145],"emphysema.":[147],"A":[148],"comparative":[149],"analysis":[150],"shows":[151],"performance":[153],"on":[158],"two":[159],"publicly":[160],"available":[161],"datasets.":[162]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
