{"id":"https://openalex.org/W2979634432","doi":"https://doi.org/10.1109/embc.2019.8856567","title":"Instance Segmentation of Nematode Cysts in Microscopic Images of Soil Samples","display_name":"Instance Segmentation of Nematode Cysts in Microscopic Images of Soil Samples","publication_year":2019,"publication_date":"2019-07-01","ids":{"openalex":"https://openalex.org/W2979634432","doi":"https://doi.org/10.1109/embc.2019.8856567","mag":"2979634432","pmid":"https://pubmed.ncbi.nlm.nih.gov/31947199"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2019.8856567","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2019.8856567","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100336450","display_name":"Long Chen","orcid":"https://orcid.org/0000-0003-4925-0572"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Long Chen","raw_affiliation_strings":["Imaging and Computer Vision, RWTH Aachen University, Aachen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imaging and Computer Vision, RWTH Aachen University, Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027603226","display_name":"Martin Strauch","orcid":"https://orcid.org/0000-0001-6754-211X"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Strauch","raw_affiliation_strings":["Imaging and Computer Vision, RWTH Aachen University, Aachen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imaging and Computer Vision, RWTH Aachen University, Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052011017","display_name":"Matthias Daub","orcid":"https://orcid.org/0000-0001-8279-0832"},"institutions":[{"id":"https://openalex.org/I1326965316","display_name":"Julius K\u00fchn-Institut","ror":"https://ror.org/022d5qt08","country_code":"DE","type":"government","lineage":["https://openalex.org/I1326965316","https://openalex.org/I2801963157"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Daub","raw_affiliation_strings":["Julius Kuhn Institute: Federal Research Centre for Cultivated Plants, Elsdorf, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Julius Kuhn Institute: Federal Research Centre for Cultivated Plants, Elsdorf, Germany","institution_ids":["https://openalex.org/I1326965316"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041740187","display_name":"Marcus Jansen","orcid":"https://orcid.org/0000-0003-1866-6196"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marcus Jansen","raw_affiliation_strings":["LemnaTec GmbH, Aachen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LemnaTec GmbH, Aachen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060884084","display_name":"Hans-Georg Luigs","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hans-Georg Luigs","raw_affiliation_strings":["LemnaTec GmbH, Aachen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LemnaTec GmbH, Aachen, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064747056","display_name":"Dorit Merhof","orcid":"https://orcid.org/0000-0002-1672-2185"},"institutions":[{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dorit Merhof","raw_affiliation_strings":["Imaging and Computer Vision, RWTH Aachen University, Aachen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imaging and Computer Vision, RWTH Aachen University, Aachen, Germany","institution_ids":["https://openalex.org/I887968799"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2019","issue":null,"first_page":"5932","last_page":"5936"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7066184282302856},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6985831260681152},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6495859622955322},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6082320809364319},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5174063444137573},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5089781284332275},{"id":"https://openalex.org/keywords/detector","display_name":"Detector","score":0.5017204284667969},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.49015554785728455},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4580305218696594},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.44404134154319763},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.433986634016037},{"id":"https://openalex.org/keywords/nematode","display_name":"Nematode","score":0.42491716146469116},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12778517603874207}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7066184282302856},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6985831260681152},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6495859622955322},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6082320809364319},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5174063444137573},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5089781284332275},{"id":"https://openalex.org/C94915269","wikidata":"https://www.wikidata.org/wiki/Q1834857","display_name":"Detector","level":2,"score":0.5017204284667969},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.49015554785728455},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4580305218696594},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.44404134154319763},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.433986634016037},{"id":"https://openalex.org/C2778830712","wikidata":"https://www.wikidata.org/wiki/Q5185","display_name":"Nematode","level":2,"score":0.42491716146469116},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12778517603874207},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009348","descriptor_name":"Nematoda","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009348","descriptor_name":"Nematoda","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009348","descriptor_name":"Nematoda","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012987","descriptor_name":"Soil","qualifier_ui":"Q000469","qualifier_name":"parasitology","is_major_topic":false},{"descriptor_ui":"D012987","descriptor_name":"Soil","qualifier_ui":"Q000469","qualifier_name":"parasitology","is_major_topic":false},{"descriptor_ui":"D012987","descriptor_name":"Soil","qualifier_ui":"Q000469","qualifier_name":"parasitology","is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2019.8856567","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2019.8856567","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:31947199","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31947199","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6499999761581421,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W7746136","https://openalex.org/W47906503","https://openalex.org/W1693171120","https://openalex.org/W1884253957","https://openalex.org/W1945243521","https://openalex.org/W2035060798","https://openalex.org/W2048545478","https://openalex.org/W2088049833","https://openalex.org/W2118246710","https://openalex.org/W2121494337","https://openalex.org/W2133059825","https://openalex.org/W2147237076","https://openalex.org/W2161969291","https://openalex.org/W2163352848","https://openalex.org/W2169284850","https://openalex.org/W2344654247","https://openalex.org/W2807169760"],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W2388834599","https://openalex.org/W235324452","https://openalex.org/W4234772502","https://openalex.org/W1968198319","https://openalex.org/W184654829","https://openalex.org/W2380685755","https://openalex.org/W2004641632","https://openalex.org/W4399906517","https://openalex.org/W2252100032"],"abstract_inverted_index":{"Nematodes":[0],"are":[1],"plant":[2],"parasites":[3],"that":[4,25],"cause":[5],"damage":[6],"to":[7,11,61],"crops.":[8],"In":[9,66],"order":[10],"quantify":[12],"nematode":[13,75],"infestation":[14],"based":[15],"on":[16],"soil":[17,49,81,88],"samples,":[18],"we":[19],"propose":[20,62],"an":[21,53],"instance":[22,63],"segmentation":[23,64],"method":[24],"will":[26],"serve":[27],"as":[28,44],"the":[29,74,78,91,105],"basis":[30],"of":[31,40,58,87,101,112],"automatic":[32],"quantitative":[33],"analysis.":[34],"We":[35,51],"consider":[36],"light":[37],"microscopic":[38],"images":[39],"cluttered":[41],"object":[42],"collections":[43],"they":[45],"occur":[46],"in":[47,132],"realistic":[48],"samples.":[50],"introduce":[52],"algorithm,":[54],"LMBI":[55,92],"(Local":[56],"Maximum":[57],"Boundary":[59],"Intensity)":[60],"candidates.":[65],"a":[67,70,84,98],"second":[68],"step,":[69],"SVM":[71],"classifier":[72],"separates":[73],"cysts":[76],"among":[77],"candidates":[79],"from":[80],"particles.":[82],"On":[83],"data":[85],"set":[86],"sample":[89],"images,":[90],"detector":[93],"achieves":[94,108],"near-optimal":[95],"recall":[96,109],"with":[97],"limited":[99],"number":[100],"candidate":[102],"segmentations,":[103],"and":[104,110,121,130],"combined":[106],"detector/classifier":[107],"precision":[111],"0.7.":[113],"The":[114],"pipeline":[115],"only":[116],"requires":[117],"simple":[118],"dot":[119],"annotations":[120],"\u2248moderately":[122],"sized":[123],"training":[124,131],"data,":[125],"which":[126],"enables":[127],"quick":[128],"annotating":[129],"laboratory":[133],"applications.":[134]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2019-10-18T00:00:00"}