{"id":"https://openalex.org/W2884596340","doi":"https://doi.org/10.1109/embc.2018.8512403","title":"Performance of Registration Tools on High-Resolution 3D Brain Images","display_name":"Performance of Registration Tools on High-Resolution 3D Brain Images","publication_year":2018,"publication_date":"2018-07-01","ids":{"openalex":"https://openalex.org/W2884596340","doi":"https://doi.org/10.1109/embc.2018.8512403","mag":"2884596340","pmid":"https://pubmed.ncbi.nlm.nih.gov/30440460"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2018.8512403","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2018.8512403","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://eprints.qut.edu.au/129503/1/129503.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045564344","display_name":"Abdullah Nazib","orcid":"https://orcid.org/0000-0003-1048-0346"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Abdullah Nazib","raw_affiliation_strings":["Queensland University of Technology, Brisbane, QLD, AU"],"affiliations":[{"raw_affiliation_string":"Queensland University of Technology, Brisbane, QLD, AU","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071835331","display_name":"James C. Galloway","orcid":"https://orcid.org/0000-0002-8886-8634"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"James Galloway","raw_affiliation_strings":["Queensland University of Technology, Brisbane, QLD, AU"],"affiliations":[{"raw_affiliation_string":"Queensland University of Technology, Brisbane, QLD, AU","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034095159","display_name":"Clinton Fookes","orcid":"https://orcid.org/0000-0002-8515-6324"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Clinton Fookes","raw_affiliation_strings":["Queensland University of Technology, Brisbane, QLD, AU"],"affiliations":[{"raw_affiliation_string":"Queensland University of Technology, Brisbane, QLD, AU","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089156481","display_name":"Dimitri Perrin","orcid":"https://orcid.org/0000-0002-4007-5256"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dimitri Perrin","raw_affiliation_strings":["Queensland University of Technology, Brisbane, QLD, AU"],"affiliations":[{"raw_affiliation_string":"Queensland University of Technology, Brisbane, QLD, AU","institution_ids":["https://openalex.org/I160993911"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5045564344"],"corresponding_institution_ids":["https://openalex.org/I160993911"],"apc_list":null,"apc_paid":null,"fwci":2.5773,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.90546365,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2018","issue":null,"first_page":"566","last_page":"569"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.8697851300239563},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7865065932273865},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7095850706100464},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.6012696027755737},{"id":"https://openalex.org/keywords/image-resolution","display_name":"Image resolution","score":0.4953118860721588},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.483880877494812},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.35162651538848877},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35067087411880493}],"concepts":[{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.8697851300239563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7865065932273865},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7095850706100464},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6012696027755737},{"id":"https://openalex.org/C205372480","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Image resolution","level":2,"score":0.4953118860721588},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.483880877494812},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.35162651538848877},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35067087411880493}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/embc.2018.8512403","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2018.8512403","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:30440460","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30440460","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:eprints.qut.edu.au:129503","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/129503/1/129503.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"Chapter in Book, Report or Conference volume"}],"best_oa_location":{"id":"pmh:oai:eprints.qut.edu.au:129503","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.qut.edu.au/129503/1/129503.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"Chapter in Book, Report or Conference volume"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2884596340.pdf","grobid_xml":"https://content.openalex.org/works/W2884596340.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1970928383","https://openalex.org/W1990005524","https://openalex.org/W2051036306","https://openalex.org/W2051438014","https://openalex.org/W2107956652","https://openalex.org/W2113576511","https://openalex.org/W2133287637","https://openalex.org/W2179561038","https://openalex.org/W2203529929","https://openalex.org/W2231411829","https://openalex.org/W2298254892","https://openalex.org/W2344270078","https://openalex.org/W2413073178"],"related_works":["https://openalex.org/W3163375306","https://openalex.org/W2009466720","https://openalex.org/W2011443206","https://openalex.org/W2125070361","https://openalex.org/W2041698670","https://openalex.org/W2114100766","https://openalex.org/W2203553948","https://openalex.org/W2154555259","https://openalex.org/W2103390397","https://openalex.org/W2167923216"],"abstract_inverted_index":{"Recent":[0],"progress":[1],"in":[2,17],"tissue":[3],"clearing":[4],"allows":[5],"the":[6,96,103,108,118],"imaging":[7],"of":[8,27,85,89],"entire":[9],"organs":[10],"at":[11,49],"single-cell":[12],"resolution.":[13],"A":[14],"necessary":[15],"step":[16],"analysing":[18],"these":[19,127],"images":[20],"is":[21,40,47],"registration":[22,28,69,98,123],"across":[23],"samples.":[24],"Existing":[25],"methods":[26,109,124],"were":[29],"developed":[30],"for":[31,55,126],"lower":[32],"resolution":[33],"image":[34,68],"modalities":[35],"(e.g.,":[36],"MRI)":[37],"and":[38,45,79],"it":[39],"unclear":[41],"whether":[42],"their":[43],"performance":[44,74],"accuracy":[46],"satisfactory":[48],"this":[50,61,90],"larger":[51],"scale":[52],"(several":[53],"gigabytes":[54],"a":[56,83],"whole":[57],"mouse":[58],"brain).":[59],"In":[60],"study,":[62],"we":[63],"evaluated":[64],"five":[65],"freely":[66],"available":[67],"tools.":[70],"We":[71],"used":[72],"several":[73],"metrics":[75],"to":[76,120],"assess":[77],"accuracy,":[78,99],"completion":[80],"time":[81],"as":[82],"measure":[84],"efficiency.":[86],"The":[87,114],"results":[88,115],"evaluation":[91],"suggest":[92],"that":[93],"ANTS":[94],"provides":[95],"best":[97],"while":[100],"Elastix":[101],"has":[102],"highest":[104],"computational":[105],"efficiency":[106],"among":[107],"with":[110],"an":[111],"acceptable":[112],"accuracy.":[113],"also":[116],"highlight":[117],"need":[119],"develop":[121],"new":[122],"optimised":[125],"high-resolution":[128],"3D":[129],"images.":[130]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
