{"id":"https://openalex.org/W2754180377","doi":"https://doi.org/10.1109/embc.2017.8037786","title":"A framework for simulating gastric electrical propagation in confocal microscopy derived geometries","display_name":"A framework for simulating gastric electrical propagation in confocal microscopy derived geometries","publication_year":2017,"publication_date":"2017-07-01","ids":{"openalex":"https://openalex.org/W2754180377","doi":"https://doi.org/10.1109/embc.2017.8037786","mag":"2754180377","pmid":"https://pubmed.ncbi.nlm.nih.gov/29060827"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2017.8037786","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2017.8037786","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037947209","display_name":"Berit Krohn","orcid":null},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Berit Krohn","raw_affiliation_strings":["Institute of Applied Mechanics, University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Applied Mechanics, University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012632598","display_name":"Shameer Sathar","orcid":"https://orcid.org/0000-0002-6566-8947"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Shameer Sathar","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008095093","display_name":"Oliver R\u00f6hrle","orcid":"https://orcid.org/0000-0002-1934-6525"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Rohrle","raw_affiliation_strings":["Institute of Applied Mechanics and Cluster of Excellence for Simulation Technology (SimTech), University of Stuttgart, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Applied Mechanics and Cluster of Excellence for Simulation Technology (SimTech), University of Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039995647","display_name":"Jean\u2010Marie Vanderwinden","orcid":"https://orcid.org/0000-0002-2193-5898"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jean-Marie Vanderwinden","raw_affiliation_strings":["Faculty of Medicine, Universit\u00e9 libre de Bruxelles, Brussels, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, Universit\u00e9 libre de Bruxelles, Brussels, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000581854","display_name":"Gregory O\u2019Grady","orcid":"https://orcid.org/0000-0002-5998-1080"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Gregory O'Grady","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036297582","display_name":"Leo K. Cheng","orcid":"https://orcid.org/0000-0003-2426-8987"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Leo K. Cheng","raw_affiliation_strings":["Auckland Bioengineering Institute, University of Auckland, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Auckland Bioengineering Institute, University of Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2017","issue":null,"first_page":"4215","last_page":"4218"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interstitial-cell-of-cajal","display_name":"Interstitial cell of Cajal","score":0.7577219009399414},{"id":"https://openalex.org/keywords/confocal-microscopy","display_name":"Confocal microscopy","score":0.6083064079284668},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5567166209220886},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5529301166534424},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5519133806228638},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.5160967707633972},{"id":"https://openalex.org/keywords/gastrointestinal-tract","display_name":"Gastrointestinal tract","score":0.5022852420806885},{"id":"https://openalex.org/keywords/finite-element-method","display_name":"Finite element method","score":0.5011353492736816},{"id":"https://openalex.org/keywords/biomedical-engineering","display_name":"Biomedical engineering","score":0.4254497289657593},{"id":"https://openalex.org/keywords/motility","display_name":"Motility","score":0.41138380765914917},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.4030238687992096},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2674068808555603},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.26322731375694275},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21648675203323364},{"id":"https://openalex.org/keywords/smooth-muscle","display_name":"Smooth muscle","score":0.15030765533447266},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14627480506896973},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11844232678413391}],"concepts":[{"id":"https://openalex.org/C201539569","wikidata":"https://www.wikidata.org/wiki/Q2596185","display_name":"Interstitial cell of Cajal","level":3,"score":0.7577219009399414},{"id":"https://openalex.org/C2779178360","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal microscopy","level":2,"score":0.6083064079284668},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5567166209220886},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5529301166534424},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5519133806228638},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.5160967707633972},{"id":"https://openalex.org/C2780512811","wikidata":"https://www.wikidata.org/wiki/Q11829360","display_name":"Gastrointestinal tract","level":2,"score":0.5022852420806885},{"id":"https://openalex.org/C135628077","wikidata":"https://www.wikidata.org/wiki/Q220184","display_name":"Finite element method","level":2,"score":0.5011353492736816},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.4254497289657593},{"id":"https://openalex.org/C58207958","wikidata":"https://www.wikidata.org/wiki/Q33596","display_name":"Motility","level":2,"score":0.41138380765914917},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.4030238687992096},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2674068808555603},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.26322731375694275},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21648675203323364},{"id":"https://openalex.org/C2992686903","wikidata":"https://www.wikidata.org/wiki/Q208453","display_name":"Smooth muscle","level":2,"score":0.15030765533447266},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14627480506896973},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11844232678413391},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005769","descriptor_name":"Gastrointestinal Motility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005769","descriptor_name":"Gastrointestinal Motility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005769","descriptor_name":"Gastrointestinal Motility","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009130","descriptor_name":"Muscle, Smooth","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013270","descriptor_name":"Stomach","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013270","descriptor_name":"Stomach","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013270","descriptor_name":"Stomach","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056885","descriptor_name":"Interstitial Cells of Cajal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/embc.2017.8037786","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2017.8037786","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:29060827","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29060827","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:dipot.ulb.ac.be:2013/261782","is_oa":false,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/261782","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Conference proceedings","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/44343","is_oa":false,"landing_page_url":"http://hdl.handle.net/2292/44343","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Item"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1548395014","https://openalex.org/W1978362426","https://openalex.org/W1991175004","https://openalex.org/W2003893456","https://openalex.org/W2011814583","https://openalex.org/W2060516216","https://openalex.org/W2064227044","https://openalex.org/W2070564499","https://openalex.org/W2080925139","https://openalex.org/W2082647352","https://openalex.org/W2109991971","https://openalex.org/W2133990480","https://openalex.org/W2141927860","https://openalex.org/W2143371283","https://openalex.org/W2160829471","https://openalex.org/W2167279371","https://openalex.org/W2272546316","https://openalex.org/W2295094524"],"related_works":["https://openalex.org/W2374039547","https://openalex.org/W2010220644","https://openalex.org/W2347594796","https://openalex.org/W1963557346","https://openalex.org/W2490613879","https://openalex.org/W2012690610","https://openalex.org/W2376218043","https://openalex.org/W2726111829","https://openalex.org/W1496078382","https://openalex.org/W1966102100"],"abstract_inverted_index":{"Interstitial":[0],"Cells":[1],"of":[2,23,32,36,58,66,109,128],"Cajal":[3],"(ICC)":[4],"initiate":[5],"and":[6,30,53,91,103,126,142],"actively":[7],"propagate":[8],"electrical":[9,110],"events":[10],"in":[11,50],"the":[12,21,24,37,56,85,107,113,124],"gastrointestinal":[13,25,45],"tract":[14,26],"known":[15],"as":[16],"slow-waves.":[17],"The":[18,83,116],"slow-waves":[19],"coordinate":[20],"contraction":[22],"necessary":[27],"for":[28,55],"breakdown":[29],"mixing":[31],"ingested":[33],"food.":[34],"Degradation":[35],"ICC":[38,59,77,130],"numbers":[39],"has":[40],"been":[41],"linked":[42],"to":[43,75,105,122,138],"several":[44],"motility":[46],"disorders.":[47,68],"However,":[48],"limitations":[49],"imaging":[51],"techniques":[52,54,74],"quantification":[57],"network":[60],"structure":[61,125],"have":[62],"hindered":[63],"our":[64],"understanding":[65],"these":[67],"We":[69],"evaluated":[70],"different":[71],"machine":[72],"learning":[73],"segment":[76],"networks":[78,87],"imaged":[79],"using":[80,93],"confocal":[81],"microscopy.":[82],"accuracy":[84],"segmented":[86],"were":[88,101],"then":[89],"quantified":[90],"compared":[92],"numerical":[94],"metrics.":[95],"Structurally":[96],"realistic":[97],"finite":[98],"element":[99],"meshes":[100],"constructed":[102],"used":[104],"simulate":[106],"propagation":[108],"activation":[111],"over":[112],"tissue":[114,131],"blocks.":[115],"presented":[117],"framework":[118],"provides":[119],"a":[120],"system":[121],"quantify":[123],"function":[127],"an":[129],"sample.":[132],"These":[133],"methods":[134],"are":[135],"also":[136],"applicable":[137],"other":[139],"biological":[140],"tissues":[141],"networks.":[143]},"counts_by_year":[{"year":2020,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
