{"id":"https://openalex.org/W2535822348","doi":"https://doi.org/10.1109/embc.2016.7592071","title":"Fast submicrometer-scale imaging of whole zebrafish using the knife-edge scanning microscope","display_name":"Fast submicrometer-scale imaging of whole zebrafish using the knife-edge scanning microscope","publication_year":2016,"publication_date":"2016-08-01","ids":{"openalex":"https://openalex.org/W2535822348","doi":"https://doi.org/10.1109/embc.2016.7592071","mag":"2535822348","pmid":"https://pubmed.ncbi.nlm.nih.gov/28269597"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2016.7592071","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2016.7592071","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101654146","display_name":"Daniel E. Miller","orcid":"https://orcid.org/0000-0002-0223-9483"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel E. Miller","raw_affiliation_strings":["Department of Computer Science and Engineering, Texas A&M University, College Station, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Texas A&M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055604865","display_name":"Raj S. Shah","orcid":null},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raj S. Shah","raw_affiliation_strings":["Department of Computer Science and Engineering, Texas A&M University, College Station, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Texas A&M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037451400","display_name":"Wencong Zhang","orcid":"https://orcid.org/0000-0001-9885-2516"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wencong Zhang","raw_affiliation_strings":["Department of Computer Science and Engineering, Texas A&M University, College Station, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Texas A&M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101552801","display_name":"Jaewook Yoo","orcid":"https://orcid.org/0000-0002-5753-0710"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaewook Yoo","raw_affiliation_strings":["Department of Computer Science and Engineering, Texas A&M University, College Station, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Texas A&M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045732610","display_name":"Jaerock Kwon","orcid":"https://orcid.org/0000-0002-5687-6998"},"institutions":[{"id":"https://openalex.org/I39965400","display_name":"Kettering University","ror":"https://ror.org/03rcspa57","country_code":"US","type":"education","lineage":["https://openalex.org/I39965400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaerock Kwon","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Kettering University, Flint, MI"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Kettering University, Flint, MI","institution_ids":["https://openalex.org/I39965400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035201965","display_name":"David Mayerich","orcid":"https://orcid.org/0000-0002-3949-6133"},"institutions":[{"id":"https://openalex.org/I44461941","display_name":"University of Houston","ror":"https://ror.org/048sx0r50","country_code":"US","type":"education","lineage":["https://openalex.org/I44461941"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Mayerich","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Houston, Houston, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Houston, Houston, TX","institution_ids":["https://openalex.org/I44461941"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035096541","display_name":"John Keyser","orcid":"https://orcid.org/0000-0002-4829-9975"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Keyser","raw_affiliation_strings":["Department of Computer Science and Engineering, Texas A&M University, College Station, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Texas A&M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062000568","display_name":"Louise C. Abbott","orcid":"https://orcid.org/0000-0002-1523-1130"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Louise C. Abbott","raw_affiliation_strings":["Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011352362","display_name":"Yoonsuck Choe","orcid":"https://orcid.org/0000-0002-1454-4610"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoonsuck Choe","raw_affiliation_strings":["Department of Computer Science and Engineering, Texas A&M University, College Station, TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Texas A&M University, College Station, TX","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1878089,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2016","issue":null,"first_page":"5901","last_page":"5904"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microtome","display_name":"Microtome","score":0.7651013135910034},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5933966636657715},{"id":"https://openalex.org/keywords/microscope","display_name":"Microscope","score":0.5654156804084778},{"id":"https://openalex.org/keywords/biological-specimen","display_name":"Biological specimen","score":0.5500326752662659},{"id":"https://openalex.org/keywords/nissl-body","display_name":"Nissl body","score":0.545825719833374},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.4962487816810608},{"id":"https://openalex.org/keywords/microscope-slide","display_name":"Microscope slide","score":0.4826357960700989},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.4588518738746643},{"id":"https://openalex.org/keywords/biomedical-engineering","display_name":"Biomedical engineering","score":0.3928624093532562},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.3350660800933838},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16924265027046204},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.16892561316490173},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10236629843711853},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0672074556350708},{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.06638389825820923}],"concepts":[{"id":"https://openalex.org/C680638","wikidata":"https://www.wikidata.org/wiki/Q898419","display_name":"Microtome","level":2,"score":0.7651013135910034},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5933966636657715},{"id":"https://openalex.org/C67649825","wikidata":"https://www.wikidata.org/wiki/Q196538","display_name":"Microscope","level":2,"score":0.5654156804084778},{"id":"https://openalex.org/C64389972","wikidata":"https://www.wikidata.org/wiki/Q2075980","display_name":"Biological specimen","level":2,"score":0.5500326752662659},{"id":"https://openalex.org/C37753355","wikidata":"https://www.wikidata.org/wiki/Q911877","display_name":"Nissl body","level":3,"score":0.545825719833374},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.4962487816810608},{"id":"https://openalex.org/C2779390400","wikidata":"https://www.wikidata.org/wiki/Q900183","display_name":"Microscope slide","level":3,"score":0.4826357960700989},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.4588518738746643},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.3928624093532562},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.3350660800933838},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16924265027046204},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.16892561316490173},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10236629843711853},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0672074556350708},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.06638389825820923},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D008867","descriptor_name":"Microtomy","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D008867","descriptor_name":"Microtomy","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D008867","descriptor_name":"Microtomy","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2016.7592071","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2016.7592071","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:28269597","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28269597","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W2007100998","https://openalex.org/W2016277672","https://openalex.org/W2084381564","https://openalex.org/W2089315051","https://openalex.org/W2094584473","https://openalex.org/W2105011233","https://openalex.org/W2135278297","https://openalex.org/W2153454039","https://openalex.org/W2269162874","https://openalex.org/W2618519235"],"related_works":["https://openalex.org/W2120383543","https://openalex.org/W2141529186","https://openalex.org/W2094286834","https://openalex.org/W2064368282","https://openalex.org/W2022616979","https://openalex.org/W2076180051","https://openalex.org/W2385625896","https://openalex.org/W2461300475","https://openalex.org/W1978503599","https://openalex.org/W2535822348"],"abstract_inverted_index":{"Advances":[0],"in":[1,12,73],"high-resolution":[2],"3D":[3],"microscopy":[4],"have":[5],"enabled":[6],"the":[7,20,32,48,79],"investigation":[8],"of":[9,19,38,103],"subcellular":[10],"microstructures":[11],"biological":[13],"specimen.":[14],"For":[15],"a":[16,55,62,81,101,119],"full":[17],"understanding":[18],"organism's":[21],"structure":[22],"and":[23,65,71,88,125],"function,":[24],"it":[25],"is":[26],"mandatory":[27],"to":[28,122],"obtain":[29],"data":[30],"from":[31],"whole":[33,57],"animal,":[34],"not":[35],"just":[36],"parts":[37],"it.":[39],"In":[40],"this":[41],"paper,":[42],"we":[43],"present":[44,114],"our":[45],"work":[46],"with":[47],"Knife-Edge":[49],"Scanning":[50],"Microscope":[51],"(KESM)":[52],"for":[53,68],"imaging":[54,67,72,126],"Nissl-stained":[56],"zebrafish":[58],"larva.":[59],"KESM":[60],"combines":[61],"diamond":[63],"microtome":[64,121],"line-scan":[66],"simultaneous":[69],"sectioning":[70,124],"3D.":[74],"We":[75,112],"show":[76],"that":[77],"using":[78,118],"KESM,":[80],"zebrafish,":[82],"less":[83,90],"than":[84,91],"3":[85],"mm":[86],"long":[87],"diameter":[89],"500":[92],"\u03bcm,":[93],"can":[94],"be":[95],"imaged":[96],"within":[97],"1":[98],"hour":[99],"at":[100],"resolution":[102],"0.6":[104],"\u03bcm":[105,108],"\u00d7":[106,109],"0.7":[107],"1.0":[110],"\u03bcm.":[111],"also":[113],"new":[115],"results":[116],"on":[117],"vibrating":[120],"improve":[123],"robustness.":[127]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
