{"id":"https://openalex.org/W2294364465","doi":"https://doi.org/10.1109/embc.2015.7319820","title":"Detection and density estimation of goblet cells in confocal endoscopy for the evaluation of celiac disease","display_name":"Detection and density estimation of goblet cells in confocal endoscopy for the evaluation of celiac disease","publication_year":2015,"publication_date":"2015-08-01","ids":{"openalex":"https://openalex.org/W2294364465","doi":"https://doi.org/10.1109/embc.2015.7319820","mag":"2294364465","pmid":"https://pubmed.ncbi.nlm.nih.gov/26737720"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2015.7319820","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2015.7319820","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057354172","display_name":"Davide Boschetto","orcid":null},"institutions":[{"id":"https://openalex.org/I127077003","display_name":"IMT School for Advanced Studies Lucca","ror":"https://ror.org/035gh3a49","country_code":"IT","type":"education","lineage":["https://openalex.org/I127077003"]},{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"D. Boschetto","raw_affiliation_strings":["Department of Information Engineering of the University of Padova, Padova, Italy","IMT Institute for Advanced Studies Lucca, Lucca, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering of the University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"IMT Institute for Advanced Studies Lucca, Lucca, Italy","institution_ids":["https://openalex.org/I127077003"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110322232","display_name":"Hadis Mirzaei","orcid":null},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"H. Mirzaei","raw_affiliation_strings":["Gastroenterology and Liver Services, University of New South Wales, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Gastroenterology and Liver Services, University of New South Wales, Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020598469","display_name":"Rupert W. Leong","orcid":"https://orcid.org/0000-0001-5944-3488"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"R. W. L. Leong","raw_affiliation_strings":["Gastroenterology and Liver Services, University of New South Wales, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Gastroenterology and Liver Services, University of New South Wales, Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022937331","display_name":"Enrico Grisan","orcid":"https://orcid.org/0000-0002-7365-5652"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"E. Grisan","raw_affiliation_strings":["Department of Information Engineering of the University of Padova, Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering of the University of Padova, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5057354172"],"corresponding_institution_ids":["https://openalex.org/I127077003","https://openalex.org/I138689650"],"apc_list":null,"apc_paid":null,"fwci":0.4714,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.68726592,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"51","issue":null,"first_page":"6248","last_page":"6251"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11348","display_name":"Celiac Disease Research and Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11348","display_name":"Celiac Disease Research and Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13569","display_name":"Microscopic Colitis","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10134","display_name":"Inflammatory Bowel Disease","score":0.9628000259399414,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.5826236605644226},{"id":"https://openalex.org/keywords/endoscopy","display_name":"Endoscopy","score":0.5547441840171814},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.472127765417099},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.43287140130996704},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.307908296585083},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.30774855613708496},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.22727099061012268},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10092759132385254},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.08102744817733765}],"concepts":[{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.5826236605644226},{"id":"https://openalex.org/C2778451229","wikidata":"https://www.wikidata.org/wiki/Q212809","display_name":"Endoscopy","level":2,"score":0.5547441840171814},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.472127765417099},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.43287140130996704},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.307908296585083},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.30774855613708496},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.22727099061012268},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10092759132385254},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.08102744817733765}],"mesh":[{"descriptor_ui":"D002446","descriptor_name":"Celiac Disease","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D002446","descriptor_name":"Celiac Disease","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D002446","descriptor_name":"Celiac Disease","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D002446","descriptor_name":"Celiac Disease","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D002446","descriptor_name":"Celiac Disease","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D002446","descriptor_name":"Celiac Disease","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D004386","descriptor_name":"Duodenum","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D004386","descriptor_name":"Duodenum","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D004386","descriptor_name":"Duodenum","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016099","descriptor_name":"Endoscopy, Gastrointestinal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016099","descriptor_name":"Endoscopy, Gastrointestinal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016099","descriptor_name":"Endoscopy, Gastrointestinal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020397","descriptor_name":"Goblet Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D020397","descriptor_name":"Goblet Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D020397","descriptor_name":"Goblet Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/embc.2015.7319820","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2015.7319820","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:26737720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26737720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:www.research.unipd.it:11577/3188679","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3188679","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8199999928474426,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1627054999","https://openalex.org/W1967005434","https://openalex.org/W2053427314","https://openalex.org/W2053614228","https://openalex.org/W2054111565","https://openalex.org/W2060185586","https://openalex.org/W2065057152","https://openalex.org/W2079524461","https://openalex.org/W2088968821","https://openalex.org/W2152575748","https://openalex.org/W6636671767"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725","https://openalex.org/W2148612803"],"abstract_inverted_index":{"Celiac":[0],"Disease":[1],"(CD)":[2],"is":[3,116,131,147],"an":[4],"immune-mediated":[5],"enteropathy,":[6],"diagnosed":[7],"in":[8,36,57,87,156,160],"the":[9,16,47,75,102,113],"clinical":[10],"practice":[11],"by":[12],"intestinal":[13],"biopsy":[14],"and":[15,30,105,112,134,151,164,182],"concomitant":[17],"presence":[18,61],"of":[19,40,50,62,77,89,96,100,178],"a":[20,55,70,93,97,122,157,161,175],"positive":[21],"celiac":[22],"serology.":[23],"Confocal":[24],"Laser":[25],"Endomicroscopy":[26],"(CLE)":[27],"allows":[28,46],"skilled":[29],"trained":[31],"experts":[32],"to":[33,149],"potentially":[34],"perform":[35],"vivo":[37],"virtual":[38],"histology":[39],"small-bowel":[41],"mucosa.":[42],"In":[43],"particular,":[44],"it":[45],"qualitative":[48],"evaluation":[49],"mucosa":[51],"alteration":[52],"such":[53],"as":[54,136],"decrease":[56],"goblet":[58,78,106,137,153,184],"cells":[59,79,154],"density,":[60],"villous":[63],"atrophy":[64],"or":[65,139],"crypt":[66],"hypertrophy.":[67],"We":[68],"present":[69],"semi-automatic":[71],"computer-based":[72],"method":[73,146],"for":[74],"detection":[76],"from":[80,118],"confocal":[81],"endoscopy":[82],"images,":[83],"whose":[84],"density":[85],"changes":[86],"case":[88],"pathological":[90],"tissue.":[91],"After":[92],"manual":[94],"selection":[95],"suitable":[98],"region":[99,126],"interest,":[101],"candidate":[103],"columnar":[104,158],"cells'":[107],"centers":[108],"are":[109,187],"first":[110],"detected":[111],"cellular":[114],"architecture":[115],"estimated":[117,181],"their":[119],"position":[120],"using":[121],"Voronoi":[123,129],"diagram.":[124],"The":[125,141],"within":[127],"each":[128],"cell":[130,138,185],"then":[132],"analyzed":[133],"classified":[135],"other.":[140],"results":[142],"suggest":[143],"that":[144],"our":[145],"able":[148],"detect":[150],"label":[152],"immersed":[155],"epithelium":[159],"fast,":[162],"reliable":[163],"automatic":[165],"way.":[166],"Accepting":[167],"0.44":[168],"false":[169],"positives":[170],"per":[171],"image,":[172],"we":[173],"obtain":[174],"sensitivity":[176],"value":[177],"90.3%.":[179],"Furthermore,":[180],"real":[183],"densities":[186],"comparable":[188],"(error:":[189],"9.7":[190],"\u00b1":[191],"16.9%,":[192],"correlation:":[193],"87.2%,":[194],"R(2)":[195],"=":[196],"76%).":[197]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
