{"id":"https://openalex.org/W2294087988","doi":"https://doi.org/10.1109/embc.2015.7319086","title":"Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions","display_name":"Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions","publication_year":2015,"publication_date":"2015-08-01","ids":{"openalex":"https://openalex.org/W2294087988","doi":"https://doi.org/10.1109/embc.2015.7319086","mag":"2294087988","pmid":"https://pubmed.ncbi.nlm.nih.gov/26736986"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2015.7319086","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2015.7319086","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/1268010","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036745591","display_name":"Edgar D. Coelho","orcid":null},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Edgar D. Coelho","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics, Institute of Electronics and Telematics Engineering of Aveiro, University of Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics, Institute of Electronics and Telematics Engineering of Aveiro, University of Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043572862","display_name":"Joel P. Arrais","orcid":"https://orcid.org/0000-0003-4937-2334"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Joel P. Arrais","raw_affiliation_strings":["Department of Informatics Engineering, University of Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics Engineering, University of Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524956","display_name":"Jos\u00e9 Lu\u00eds Oliveira","orcid":"https://orcid.org/0000-0002-6672-6176"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jose Luis Oliveira","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics, Institute of Electronics and Telematics Engineering of Aveiro, University of Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics, Institute of Electronics and Telematics Engineering of Aveiro, University of Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2015","issue":null,"first_page":"3254","last_page":"3257"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7051947116851807},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6616063117980957},{"id":"https://openalex.org/keywords/microorganism","display_name":"Microorganism","score":0.6372294425964355},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.605676531791687},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5989872217178345},{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.5357419848442078},{"id":"https://openalex.org/keywords/diversity","display_name":"Diversity (politics)","score":0.4730873703956604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46000510454177856},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4219316244125366},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.41948145627975464},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3275641202926636},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26828718185424805},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.1994544267654419},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16612401604652405},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07746303081512451}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7051947116851807},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6616063117980957},{"id":"https://openalex.org/C175605896","wikidata":"https://www.wikidata.org/wiki/Q39833","display_name":"Microorganism","level":3,"score":0.6372294425964355},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.605676531791687},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5989872217178345},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.5357419848442078},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.4730873703956604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46000510454177856},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4219316244125366},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.41948145627975464},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3275641202926636},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26828718185424805},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.1994544267654419},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16612401604652405},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07746303081512451},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/embc.2015.7319086","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2015.7319086","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:26736986","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26736986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:zenodo.org:1268010","is_oa":true,"landing_page_url":"https://zenodo.org/record/1268010","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:1268010","is_oa":true,"landing_page_url":"https://zenodo.org/record/1268010","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.699999988079071,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1592481264","https://openalex.org/W1966179285","https://openalex.org/W1989277387","https://openalex.org/W2012490955","https://openalex.org/W2018523610","https://openalex.org/W2037808674","https://openalex.org/W2050968841","https://openalex.org/W2054259512","https://openalex.org/W2100228443","https://openalex.org/W2106794374","https://openalex.org/W2110579047","https://openalex.org/W2114754726","https://openalex.org/W2117733468","https://openalex.org/W2124535041","https://openalex.org/W2125755185","https://openalex.org/W2128769815","https://openalex.org/W2131186249","https://openalex.org/W2139975770","https://openalex.org/W2146675374","https://openalex.org/W2146883699","https://openalex.org/W2147637673","https://openalex.org/W2149515881","https://openalex.org/W2153349010","https://openalex.org/W2163485494","https://openalex.org/W4237335579","https://openalex.org/W6819133582"],"related_works":["https://openalex.org/W2595711621","https://openalex.org/W1968369492","https://openalex.org/W2043102924","https://openalex.org/W2965705087","https://openalex.org/W3137578603","https://openalex.org/W2069773272","https://openalex.org/W2114605673","https://openalex.org/W4312678993","https://openalex.org/W1542636957","https://openalex.org/W3139084279"],"abstract_inverted_index":{"Microbial":[0],"species":[1,17],"thrive":[2],"within":[3],"human":[4,34,50],"hosts":[5],"by":[6,56],"establishing":[7],"complex":[8],"associations":[9],"between":[10],"themselves":[11],"and":[12,23,75],"the":[13,29,54],"host.":[14],"Even":[15],"though":[16],"diversity":[18],"can":[19],"be":[20,87],"measured":[21],"(alpha-":[22],"beta-diversity),":[24],"a":[25,44,82],"methodology":[26,80],"to":[27,47,86],"estimate":[28,48],"impact":[30],"of":[31],"microorganisms":[32,62],"in":[33,65],"pathways":[35,51],"is":[36],"still":[37],"lacking.":[38],"In":[39],"this":[40,66,79],"work":[41],"we":[42,77],"propose":[43,78],"computational":[45],"approach":[46,85],"which":[49,61],"are":[52,63],"targeted":[53],"most":[55],"microorganisms,":[57],"while":[58],"also":[59],"identifying":[60],"prominent":[64],"targeting.":[67],"Our":[68],"results":[69],"were":[70],"consistent":[71],"with":[72],"literature":[73],"evidence,":[74],"thus":[76],"as":[81],"new":[83],"prospective":[84],"used":[88],"for":[89],"screening":[90],"potentially":[91],"impacted":[92],"pathways.":[93]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2016-06-24T00:00:00"}
