{"id":"https://openalex.org/W2323081015","doi":"https://doi.org/10.1109/embc.2014.6945164","title":"Diffeomorphic registration with self-adaptive spatial regularization for the segmentation of non-human primate brains","display_name":"Diffeomorphic registration with self-adaptive spatial regularization for the segmentation of non-human primate brains","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2323081015","doi":"https://doi.org/10.1109/embc.2014.6945164","mag":"2323081015","pmid":"https://pubmed.ncbi.nlm.nih.gov/25571532"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2014.6945164","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6945164","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082554847","display_name":"Laurent Risser","orcid":"https://orcid.org/0000-0003-2207-6615"},"institutions":[{"id":"https://openalex.org/I4210098964","display_name":"Toulouse Mathematics Institute","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210098964"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Laurent Risser","raw_affiliation_strings":["CNRS/Universite Toulouse 3 Paul Sabatier, Institut de Mathematiques de Toulouse (IMT UMR5219), Toulouse, France"],"affiliations":[{"raw_affiliation_string":"CNRS/Universite Toulouse 3 Paul Sabatier, Institut de Mathematiques de Toulouse (IMT UMR5219), Toulouse, France","institution_ids":["https://openalex.org/I4210098964","https://openalex.org/I134560555","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022909323","display_name":"Lionel Dolius","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210145991","display_name":"Centre de recherche cerveau et cognition","ror":"https://ror.org/04fhrs205","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210096427","https://openalex.org/I4210145991","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lionel Dolius","raw_affiliation_strings":["CNRS/Universite Toulouse 3 Paul Sabatier, Centre de Recherche Cerveau et Cognition (CERCO UMR5549), Toulouse, France"],"affiliations":[{"raw_affiliation_string":"CNRS/Universite Toulouse 3 Paul Sabatier, Centre de Recherche Cerveau et Cognition (CERCO UMR5549), Toulouse, France","institution_ids":["https://openalex.org/I4210145991","https://openalex.org/I134560555","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056293115","display_name":"Caroline Fonta","orcid":"https://orcid.org/0000-0001-6326-4044"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210145991","display_name":"Centre de recherche cerveau et cognition","ror":"https://ror.org/04fhrs205","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210096427","https://openalex.org/I4210145991","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Caroline Fonta","raw_affiliation_strings":["CNRS/Universite Toulouse 3 Paul Sabatier, Centre de Recherche Cerveau et Cognition (CERCO UMR5549), Toulouse, France"],"affiliations":[{"raw_affiliation_string":"CNRS/Universite Toulouse 3 Paul Sabatier, Centre de Recherche Cerveau et Cognition (CERCO UMR5549), Toulouse, France","institution_ids":["https://openalex.org/I4210145991","https://openalex.org/I134560555","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067769207","display_name":"Muriel Mescam","orcid":"https://orcid.org/0000-0002-0147-8028"},"institutions":[{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210145991","display_name":"Centre de recherche cerveau et cognition","ror":"https://ror.org/04fhrs205","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210096427","https://openalex.org/I4210145991","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Muriel Mescam","raw_affiliation_strings":["CNRS/Universite Toulouse 3 Paul Sabatier, Centre de Recherche Cerveau et Cognition (CERCO UMR5549), Toulouse, France"],"affiliations":[{"raw_affiliation_string":"CNRS/Universite Toulouse 3 Paul Sabatier, Centre de Recherche Cerveau et Cognition (CERCO UMR5549), Toulouse, France","institution_ids":["https://openalex.org/I4210145991","https://openalex.org/I134560555","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5082554847"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210098964"],"apc_list":null,"apc_paid":null,"fwci":0.4877,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72203942,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2014","issue":null,"first_page":"6695","last_page":"6698"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10191","display_name":"Robotics and Sensor-Based Localization","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/marmoset","display_name":"Marmoset","score":0.8997420072555542},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7141764163970947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6789875030517578},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6571072936058044},{"id":"https://openalex.org/keywords/human-brain","display_name":"Human brain","score":0.6022183299064636},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5709028840065002},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5504981279373169},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.5395028591156006},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.4775198996067047},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.46617817878723145},{"id":"https://openalex.org/keywords/diffeomorphism","display_name":"Diffeomorphism","score":0.4483814537525177},{"id":"https://openalex.org/keywords/primate","display_name":"Primate","score":0.42966562509536743},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.3438846468925476},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1828640103340149},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15680521726608276}],"concepts":[{"id":"https://openalex.org/C2776453536","wikidata":"https://www.wikidata.org/wiki/Q19829485","display_name":"Marmoset","level":2,"score":0.8997420072555542},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7141764163970947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6789875030517578},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6571072936058044},{"id":"https://openalex.org/C2777670902","wikidata":"https://www.wikidata.org/wiki/Q492038","display_name":"Human brain","level":2,"score":0.6022183299064636},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5709028840065002},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5504981279373169},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.5395028591156006},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.4775198996067047},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.46617817878723145},{"id":"https://openalex.org/C47556283","wikidata":"https://www.wikidata.org/wiki/Q1058314","display_name":"Diffeomorphism","level":2,"score":0.4483814537525177},{"id":"https://openalex.org/C2780509455","wikidata":"https://www.wikidata.org/wiki/Q7380","display_name":"Primate","level":2,"score":0.42966562509536743},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3438846468925476},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1828640103340149},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15680521726608276},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D003287","descriptor_name":"Contrast Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003287","descriptor_name":"Contrast Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003287","descriptor_name":"Contrast Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2014.6945164","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6945164","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:25571532","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25571532","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320326727","display_name":"Institut des Sciences du Cerveau de Toulouse","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W303948879","https://openalex.org/W1564266376","https://openalex.org/W1576885112","https://openalex.org/W1579576867","https://openalex.org/W1960717653","https://openalex.org/W1975678598","https://openalex.org/W1995772049","https://openalex.org/W2028785814","https://openalex.org/W2128907102","https://openalex.org/W2134286053","https://openalex.org/W2162430695","https://openalex.org/W6610660478","https://openalex.org/W6634300281","https://openalex.org/W6683514245"],"related_works":["https://openalex.org/W2083305474","https://openalex.org/W2809151976","https://openalex.org/W4383425778","https://openalex.org/W2967932837","https://openalex.org/W1965129465","https://openalex.org/W3048078172","https://openalex.org/W2048032140","https://openalex.org/W2913733140","https://openalex.org/W4285085362","https://openalex.org/W2090316188"],"abstract_inverted_index":{"Cerebral":[0],"aging":[1,34],"has":[2],"been":[3],"linked":[4],"to":[5,26,93,103,118,123],"structural":[6],"and":[7,37],"functional":[8],"changes":[9],"in":[10,24,35],"the":[11,18,30,41,95,126,130,141],"brain":[12,33,42,60,70,101],"throughout":[13],"life.":[14],"Here,":[15],"we":[16,81,135],"study":[17],"marmoset,":[19],"a":[20,53,64,83,99,120,137,147],"small":[21,44],"non-human":[22],"primate,":[23],"order":[25],"get":[27],"insights":[28],"into":[29],"mechanisms":[31],"of":[32,43,90,98,107,114,129,140],"normal":[36],"pathological":[38],"conditions.":[39],"Imaging":[40],"animals":[45],"with":[46,58,75,146],"techniques":[47],"such":[48,68],"as":[49,69],"MRI,":[50],"quickly":[51],"becomes":[52],"challenging":[54],"task":[55],"when":[56],"compared":[57],"human":[59],"imaging.":[61],"Very":[62],"often,":[63],"simple":[65],"pre-processing":[66],"step":[67],"extraction":[71],"cannot":[72],"be":[73],"achieved":[74],"classical":[76],"tools.":[77],"In":[78],"this":[79],"paper,":[80],"propose":[82],"diffeomorphic":[84],"registration":[85],"algorithm,":[86],"which":[87],"makes":[88],"use":[89],"learned":[91],"constraints":[92],"propagate":[94],"manual":[96],"segmentation":[97,139],"marmoset":[100,108],"template":[102],"other":[104],"MR":[105],"images":[106,145],"brains.":[109],"The":[110],"main":[111],"methological":[112],"contribution":[113],"our":[115],"paper":[116],"is":[117],"explore":[119],"new":[121],"strategy":[122],"automatically":[124],"tune":[125],"spatial":[127],"regularization":[128],"deformations.":[131],"Results":[132],"show":[133],"that":[134],"obtain":[136],"robust":[138],"brain,":[142],"even":[143],"for":[144],"low":[148],"contrast.":[149]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
