{"id":"https://openalex.org/W2048257735","doi":"https://doi.org/10.1109/embc.2014.6944806","title":"State machine modeling of MAPK signaling pathways","display_name":"State machine modeling of MAPK signaling pathways","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2048257735","doi":"https://doi.org/10.1109/embc.2014.6944806","mag":"2048257735","pmid":"https://pubmed.ncbi.nlm.nih.gov/25571174"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2014.6944806","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6944806","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053271609","display_name":"Youcef Derbal","orcid":"https://orcid.org/0000-0003-3317-9417"},"institutions":[{"id":"https://openalex.org/I530967","display_name":"Toronto Metropolitan University","ror":"https://ror.org/05g13zd79","country_code":"CA","type":"education","lineage":["https://openalex.org/I530967"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Youcef Derbal","raw_affiliation_strings":["Ted Rogers School of Information Technology Management, Ryerson University, Toronto, ON, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ted Rogers School of Information Technology Management, Ryerson University, Toronto, ON, Canada","institution_ids":["https://openalex.org/I530967"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5053271609"],"corresponding_institution_ids":["https://openalex.org/I530967"],"apc_list":null,"apc_paid":null,"fwci":2.1287,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.87066767,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2014","issue":null,"first_page":"5236","last_page":"5239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10169","display_name":"Protein Kinase Regulation and GTPase Signaling","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mapk/erk-pathway","display_name":"MAPK/ERK pathway","score":0.845596969127655},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.6695886850357056},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.654168426990509},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.6331869959831238},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.5632963180541992},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.49898433685302734},{"id":"https://openalex.org/keywords/anti-apoptotic-ras-signalling-cascade","display_name":"Anti-apoptotic Ras signalling cascade","score":0.4926055073738098},{"id":"https://openalex.org/keywords/extracellular","display_name":"Extracellular","score":0.42992740869522095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3717542886734009},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32959315180778503},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.14799979329109192},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07975614070892334}],"concepts":[{"id":"https://openalex.org/C57074206","wikidata":"https://www.wikidata.org/wiki/Q14197552","display_name":"MAPK/ERK pathway","level":3,"score":0.845596969127655},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.6695886850357056},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.654168426990509},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.6331869959831238},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.5632963180541992},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.49898433685302734},{"id":"https://openalex.org/C127812441","wikidata":"https://www.wikidata.org/wiki/Q4774319","display_name":"Anti-apoptotic Ras signalling cascade","level":4,"score":0.4926055073738098},{"id":"https://openalex.org/C28406088","wikidata":"https://www.wikidata.org/wiki/Q5571762","display_name":"Extracellular","level":2,"score":0.42992740869522095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3717542886734009},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32959315180778503},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.14799979329109192},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07975614070892334}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018631","descriptor_name":"ras Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018631","descriptor_name":"ras Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018631","descriptor_name":"ras Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020935","descriptor_name":"MAP Kinase Signaling System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020935","descriptor_name":"MAP Kinase Signaling System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020935","descriptor_name":"MAP Kinase Signaling System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D048049","descriptor_name":"Extracellular Signal-Regulated MAP Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D048049","descriptor_name":"Extracellular Signal-Regulated MAP Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D048049","descriptor_name":"Extracellular Signal-Regulated MAP Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2014.6944806","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6944806","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:25571174","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25571174","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6899999976158142,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1782369362","https://openalex.org/W1965853004","https://openalex.org/W1980396134","https://openalex.org/W1986314791","https://openalex.org/W1990736894","https://openalex.org/W1998203489","https://openalex.org/W2001620484","https://openalex.org/W2034269086","https://openalex.org/W2041603328","https://openalex.org/W2051648135","https://openalex.org/W2059170177","https://openalex.org/W2062289724","https://openalex.org/W2075161553","https://openalex.org/W2133667940","https://openalex.org/W2165708858","https://openalex.org/W4241963202"],"related_works":["https://openalex.org/W2413177566","https://openalex.org/W1973675652","https://openalex.org/W2951232288","https://openalex.org/W2891481558","https://openalex.org/W1581351659","https://openalex.org/W2324952371","https://openalex.org/W4379984626","https://openalex.org/W2137969630","https://openalex.org/W1976944452","https://openalex.org/W2111244172"],"abstract_inverted_index":{"Mitogen":[0],"activated":[1],"protein":[2],"kinase":[3,78],"(MAPK)":[4],"signaling":[5,30,57],"pathways":[6],"are":[7,31],"frequently":[8,84],"deregulated":[9],"in":[10,16,90],"human":[11],"cancers":[12],"with":[13],"potential":[14],"involvement":[15],"most":[17],"if":[18],"not":[19],"all":[20],"cellular":[21,56],"processes":[22],"leading":[23],"to":[24,33,63,74],"tumorigenesis.":[25],"Mathematical/computational":[26],"models":[27,66],"of":[28,36,54,67,93],"MAPK":[29,55],"indispensable":[32],"the":[34,75,83],"study":[35],"pathway":[37,80],"deregulation":[38],"dynamics":[39],"and":[40,47,87],"their":[41],"nonlinear":[42],"effects":[43],"on":[44],"cell":[45],"fate":[46],"carcinogenesis.":[48],"A":[49],"finite":[50],"state":[51],"machine":[52],"model":[53],"is":[58,72],"explored":[59],"as":[60],"an":[61],"alternative":[62],"differential":[64],"equations-based":[65],"kinetics.":[68],"The":[69],"proposed":[70],"approach":[71],"applied":[73],"Ras-Extracellular":[76],"signal-regulated":[77],"(Ras-ERK)":[79],"which":[81],"includes":[82],"mutated":[85],"Ras":[86],"RAF":[88],"proteins":[89],"many":[91],"types":[92],"carcinomas.":[94]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
