{"id":"https://openalex.org/W2078833886","doi":"https://doi.org/10.1109/embc.2014.6944561","title":"BiofilmQuant: A computer-assisted tool for dental biofilm quantification","display_name":"BiofilmQuant: A computer-assisted tool for dental biofilm quantification","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2078833886","doi":"https://doi.org/10.1109/embc.2014.6944561","mag":"2078833886","pmid":"https://pubmed.ncbi.nlm.nih.gov/25570929"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2014.6944561","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6944561","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1407.0765","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Awais Mansoor","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Awais Mansoor","raw_affiliation_strings":["The Department of Radiology and Imaging Sciences, Purdue University, West Lafayette, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Department of Radiology and Imaging Sciences, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Valery Patsekin","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valery Patsekin","raw_affiliation_strings":["Bindley Bioscience Center, Purdue University, West Lafayette, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bindley Bioscience Center, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Dale Scherl","orcid":null},"institutions":[{"id":"https://openalex.org/I4210160190","display_name":"Hill Top Research (United States)","ror":"https://ror.org/054r3wx31","country_code":"US","type":"company","lineage":["https://openalex.org/I4210160190"]},{"id":"https://openalex.org/I4387154522","display_name":"Hill's Pet Nutrition (United States)","ror":"https://ror.org/05ygyfy76","country_code":null,"type":"company","lineage":["https://openalex.org/I4387154522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dale Scherl","raw_affiliation_strings":["Hill's Pet Nutrition, Topeka, KS, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hill's Pet Nutrition, Topeka, KS, USA","institution_ids":["https://openalex.org/I4210160190","https://openalex.org/I4387154522"]}]},{"author_position":"middle","author":{"id":null,"display_name":"J. Paul Robinson","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Paul Robinson","raw_affiliation_strings":["Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":null,"display_name":"Bartlomiej Rajwa","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bartlomiej Rajwa","raw_affiliation_strings":["Bindley Bioscience Center, Purdue University, West Lafayette, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bindley Bioscience Center, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.17699115,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"55","issue":null,"first_page":"4244","last_page":"4247"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biofilm","display_name":"Biofilm","score":0.6696000099182129},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5543000102043152},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5497999787330627},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47269999980926514},{"id":"https://openalex.org/keywords/overlay","display_name":"Overlay","score":0.36419999599456787},{"id":"https://openalex.org/keywords/software-tool","display_name":"Software tool","score":0.3506999909877777},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.3492000102996826},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.3472000062465668}],"concepts":[{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.6696000099182129},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5916000008583069},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5543000102043152},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5497999787330627},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47269999980926514},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40369999408721924},{"id":"https://openalex.org/C136085584","wikidata":"https://www.wikidata.org/wiki/Q910289","display_name":"Overlay","level":2,"score":0.36419999599456787},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.3506999909877777},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.3492000102996826},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.3472000062465668},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32199999690055847},{"id":"https://openalex.org/C2991918945","wikidata":"https://www.wikidata.org/wiki/Q12128","display_name":"Dental practice","level":2,"score":0.2948000133037567},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.29089999198913574},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.28450000286102295},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.2831999957561493},{"id":"https://openalex.org/C2779974597","wikidata":"https://www.wikidata.org/wiki/Q28448986","display_name":"Clinical Practice","level":2,"score":0.27250000834465027},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.2696000039577484},{"id":"https://openalex.org/C2779914569","wikidata":"https://www.wikidata.org/wiki/Q143504","display_name":"Dental plaque","level":2,"score":0.2648000121116638},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.26269999146461487},{"id":"https://openalex.org/C12590798","wikidata":"https://www.wikidata.org/wiki/Q3933199","display_name":"Replication (statistics)","level":2,"score":0.25110000371932983}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005453","descriptor_name":"Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005453","descriptor_name":"Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005453","descriptor_name":"Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014070","descriptor_name":"Tooth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014070","descriptor_name":"Tooth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014070","descriptor_name":"Tooth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1109/embc.2014.6944561","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6944561","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:25570929","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25570929","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:arXiv.org:1407.0765","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1407.0765","pdf_url":"https://arxiv.org/pdf/1407.0765","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:zenodo.org:1267962","is_oa":true,"landing_page_url":"https://zenodo.org/record/1267962","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1407.0765","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1407.0765","pdf_url":"https://arxiv.org/pdf/1407.0765","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W182202747","https://openalex.org/W1608329215","https://openalex.org/W1949071040","https://openalex.org/W1967362871","https://openalex.org/W1989843573","https://openalex.org/W2055958244","https://openalex.org/W2078598214","https://openalex.org/W2118246710","https://openalex.org/W2146934146","https://openalex.org/W2161799833","https://openalex.org/W2166800855","https://openalex.org/W6607027028","https://openalex.org/W6804548714"],"related_works":[],"abstract_inverted_index":{"Dental":[0],"biofilm":[1,22,46,100,187],"is":[2,79],"the":[3,19,38,42,58,75,119,132,156,160,182,189],"deposition":[4],"of":[5,57,60,143,186,188,192,197],"microbial":[6],"material":[7],"over":[8],"a":[9,29,92,111,140,170,178],"tooth":[10,128],"substratum.":[11],"Several":[12],"methods":[13,47],"have":[14],"recently":[15],"been":[16],"reported":[17],"in":[18,102],"literature":[20],"for":[21,98,181],"quantification;":[23],"however,":[24],"at":[25],"best":[26],"they":[27],"provide":[28],"barely":[30],"automated":[31],"solution":[32,180],"requiring":[33],"significant":[34],"input":[35,66],"needed":[36],"from":[37],"human":[39,65],"expert.":[40],"On":[41],"contrary,":[43],"state-of-the-art":[44],"automatic":[45],"fail":[48],"to":[49,63,67,84,116,164],"make":[50],"their":[51],"way":[52],"into":[53,122],"clinical":[54],"practice":[55],"because":[56],"lack":[59],"effective":[61],"mechanism":[62],"incorporate":[64],"handle":[68],"praxis":[69],"or":[70],"misclassified":[71,167],"regions.":[72],"Manual":[73],"delineation,":[74],"current":[76],"gold":[77],"standard,":[78],"time":[80],"consuming":[81],"and":[82,127,145],"subject":[83],"expert":[85],"bias.":[86],"In":[87,173],"this":[88],"paper,":[89],"we":[90],"introduce":[91],"new":[93],"semi-automated":[94],"software":[95,109,158],"tool,":[96],"BiofilmQuant,":[97],"dental":[99,153],"quantification":[101],"quantitative":[103,184],"light-induced":[104],"fluorescence":[105],"(QLF)":[106],"images.":[107],"The":[108],"uses":[110],"robust":[112],"statistical":[113],"modeling":[114],"approach":[115],"automatically":[117],"segment":[118],"QLF":[120,152],"image":[121],"three":[123],"classes":[124],"(background,":[125],"biofilm,":[126],"substratum)":[129],"based":[130],"on":[131,147],"training":[133],"data.":[134],"This":[135],"initial":[136],"segmentation":[137],"has":[138],"shown":[139],"high":[141],"degree":[142],"consistency":[144],"precision":[146],"more":[148],"than":[149],"200":[150],"test":[151],"scans.":[154],"Further,":[155],"proposed":[157],"provides":[159,177],"clinicians":[161],"full":[162,190],"control":[163],"fix":[165],"any":[166],"areas":[168],"using":[169],"single":[171],"click.":[172],"addition,":[174],"BiofilmQuant":[175],"also":[176],"complete":[179],"longitudinal":[183],"analysis":[185],"set":[191],"teeth,":[193],"providing":[194],"greater":[195],"ease":[196],"usability.":[198]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2016-06-24T00:00:00"}
