{"id":"https://openalex.org/W2321280561","doi":"https://doi.org/10.1109/embc.2014.6944215","title":"A sputum smear microscopy image database for automatic bacilli detection in conventional microscopy","display_name":"A sputum smear microscopy image database for automatic bacilli detection in conventional microscopy","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2321280561","doi":"https://doi.org/10.1109/embc.2014.6944215","mag":"2321280561","pmid":"https://pubmed.ncbi.nlm.nih.gov/25570583"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2014.6944215","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6944215","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057891403","display_name":"M. G. F. Costa","orcid":"https://orcid.org/0000-0002-6839-1402"},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"M. G. F. Costa","raw_affiliation_strings":["Center for Research and Development in Electronic and Information Technology, Federal University of Amazonas, Manaus, AM, Brazil"],"affiliations":[{"raw_affiliation_string":"Center for Research and Development in Electronic and Information Technology, Federal University of Amazonas, Manaus, AM, Brazil","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004818827","display_name":"C\u00edcero Ferreira Fernandes Costa Filho","orcid":"https://orcid.org/0000-0003-3325-5715"},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"C. F. F. Costa Filho","raw_affiliation_strings":["Research and Development in Electronic and Information Technology, Federal University of Amazonas from Technology and Information Center, Manaus, AM, Brazil"],"affiliations":[{"raw_affiliation_string":"Research and Development in Electronic and Information Technology, Federal University of Amazonas from Technology and Information Center, Manaus, AM, Brazil","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028744413","display_name":"Almir Kimura","orcid":"https://orcid.org/0000-0001-5853-218X"},"institutions":[{"id":"https://openalex.org/I4210147594","display_name":"Universidade do Estado do Amazonas","ror":"https://ror.org/04j5z3x06","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210147594"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. Kimura","raw_affiliation_strings":["Automation and Control Department, State University of Amazon, Manaus, AM, 69050-020 Brasil"],"affiliations":[{"raw_affiliation_string":"Automation and Control Department, State University of Amazon, Manaus, AM, 69050-020 Brasil","institution_ids":["https://openalex.org/I4210147594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019455901","display_name":"Pamela Campos Levy","orcid":null},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"P. C. Levy","raw_affiliation_strings":["Center for Research and Development in Electronic and Information Technology, Federal University of Amazonas from Technology and Information Center, Manaus, AM, Brazil"],"affiliations":[{"raw_affiliation_string":"Center for Research and Development in Electronic and Information Technology, Federal University of Amazonas from Technology and Information Center, Manaus, AM, Brazil","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051796550","display_name":"Clahildek M. Xavier","orcid":null},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"C. M. Xavier","raw_affiliation_strings":["Center for Research and Development in Electronic and Information Technology, Federal University of Amazonas from Technology and Information Center, Manaus, AM, Brazil"],"affiliations":[{"raw_affiliation_string":"Center for Research and Development in Electronic and Information Technology, Federal University of Amazonas from Technology and Information Center, Manaus, AM, Brazil","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056879885","display_name":"Luciana Botinelly Mendon\u00e7a Fujimoto","orcid":"https://orcid.org/0000-0001-8560-4193"},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"L. B. Fujimoto","raw_affiliation_strings":["Medical School, Federal University of Amazon, Manaus, Brazil"],"affiliations":[{"raw_affiliation_string":"Medical School, Federal University of Amazon, Manaus, Brazil","institution_ids":["https://openalex.org/I62885914"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5057891403"],"corresponding_institution_ids":["https://openalex.org/I62885914"],"apc_list":null,"apc_paid":null,"fwci":2.6884,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.9157265,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2014","issue":null,"first_page":"2841","last_page":"2844"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7024062871932983},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6257067918777466},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5830408334732056},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5537680387496948},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5103973746299744},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5044375658035278},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.48384371399879456},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.4509260058403015},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.44235536456108093},{"id":"https://openalex.org/keywords/bacilli","display_name":"Bacilli","score":0.42186346650123596},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11885559558868408},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.11505839228630066},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0856214165687561}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7024062871932983},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6257067918777466},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5830408334732056},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5537680387496948},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5103973746299744},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5044375658035278},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.48384371399879456},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.4509260058403015},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.44235536456108093},{"id":"https://openalex.org/C2776870249","wikidata":"https://www.wikidata.org/wiki/Q149128","display_name":"Bacilli","level":3,"score":0.42186346650123596},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11885559558868408},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.11505839228630066},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0856214165687561},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001407","descriptor_name":"Bacillus","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001407","descriptor_name":"Bacillus","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001407","descriptor_name":"Bacillus","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013183","descriptor_name":"Sputum","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D013183","descriptor_name":"Sputum","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D013183","descriptor_name":"Sputum","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014397","descriptor_name":"Tuberculosis, Pulmonary","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D014397","descriptor_name":"Tuberculosis, Pulmonary","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D014397","descriptor_name":"Tuberculosis, Pulmonary","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D014397","descriptor_name":"Tuberculosis, Pulmonary","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014397","descriptor_name":"Tuberculosis, Pulmonary","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014397","descriptor_name":"Tuberculosis, Pulmonary","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2014.6944215","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2014.6944215","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:25570583","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25570583","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320316420","display_name":"United Nations Development Programme","ror":"https://ror.org/051777d98"},{"id":"https://openalex.org/F4320324221","display_name":"Instituto Nacional de Pesquisas da Amaz\u00f4nia","ror":"https://ror.org/01xe86309"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1511574369","https://openalex.org/W1615412765","https://openalex.org/W1975079102","https://openalex.org/W2063307888","https://openalex.org/W2082358568","https://openalex.org/W2094772763","https://openalex.org/W2115158471","https://openalex.org/W2117806618","https://openalex.org/W2144699585","https://openalex.org/W2161433272","https://openalex.org/W2168321673","https://openalex.org/W2187777421","https://openalex.org/W4285719527","https://openalex.org/W6630615779"],"related_works":["https://openalex.org/W2094850979","https://openalex.org/W2395966209","https://openalex.org/W2380924422","https://openalex.org/W2068086669","https://openalex.org/W2734477874","https://openalex.org/W2411221334","https://openalex.org/W2106684755","https://openalex.org/W1990022246","https://openalex.org/W3206716821","https://openalex.org/W1522196789"],"abstract_inverted_index":{"In":[0,92,109,131],"this":[1],"work,":[2],"we":[3],"present":[4],"an":[5],"image":[6,60,174],"database":[7,17,39,81],"for":[8],"automatic":[9],"bacilli":[10,210],"detection":[11],"in":[12,61,158],"sputum":[13],"smear":[14],"microscopy.":[15],"The":[16,21,63],"comprises":[18],"two":[19],"parts.":[20],"first":[22],"one,":[23,65],"called":[24,66],"the":[25,58,67,95,105,114,117,140,185,204],"autofocus":[26],"database,":[27,71,139],"contains":[28,72],"1200":[29],"images":[30,74,96,118,134],"with":[31,45,57,75,87,104],"resolution":[32,76],"of":[33,54,77,101,135,184,209],"2816":[34],"\u00d7":[35],"2112":[36],"pixels.":[37,79],"This":[38,80],"was":[40,82,156,164,187],"obtained":[41,83],"from":[42,84,99],"12":[43,85],"slides,":[44],"10":[46,55,88],"fields":[47,89,100],"per":[48,90],"slide.":[49],"Each":[50],"stack":[51],"is":[52],"composed":[53],"images,":[56],"fifth":[59],"focus.":[62],"second":[64],"segmentation":[68,136],"and":[69,137,169,207],"classification":[70,138],"120":[73,133],"2816\u00d72112":[78],"slices,":[86],"slice.":[91],"both":[93,110],"databases,":[94,111],"were":[97,119,143],"acquired":[98],"slides":[102],"stained":[103],"standard":[106,201],"Kinyoun":[107],"method.":[108],"accordingly":[112],"to":[113,123,202],"background":[115,125,129],"content,":[116],"classified":[120],"as":[121,198],"belonging":[122],"high":[124],"content":[126],"or":[127,176],"low":[128],"content.":[130],"all":[132],"identified":[141],"objects":[142,194],"enclosed":[144,157,165,188],"within":[145],"a":[146,150,159,167,170,181,190,199],"geometric":[147],"shape":[148],"by":[149,166,189],"trained":[151],"technician.":[152],"A":[153],"true":[154],"bacillus":[155,163,172],"circle.":[160],"An":[161],"agglomerated":[162],"rectangle":[168],"doubtful":[171],"(the":[173],"focus":[175],"geometry":[177],"does":[178],"not":[179],"allow":[180],"clear":[182],"identification":[183],"object)":[186],"polygon.":[191],"These":[192],"marked":[193],"could":[195],"be":[196],"used":[197],"gold":[200],"calculate":[203],"accuracy,":[205],"sensitivity":[206],"specificity":[208],"recognition.":[211]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
