{"id":"https://openalex.org/W2071248916","doi":"https://doi.org/10.1109/embc.2013.6610175","title":"Automated annotation removal in agar plates","display_name":"Automated annotation removal in agar plates","publication_year":2013,"publication_date":"2013-07-01","ids":{"openalex":"https://openalex.org/W2071248916","doi":"https://doi.org/10.1109/embc.2013.6610175","mag":"2071248916","pmid":"https://pubmed.ncbi.nlm.nih.gov/24110362"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2013.6610175","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2013.6610175","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031514867","display_name":"Sergio Vera","orcid":"https://orcid.org/0000-0002-2682-5487"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Sergio Vera","raw_affiliation_strings":["Alma IT Systems, Barcelona, Spain","Alma IT Syst., Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Alma IT Systems, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Alma IT Syst., Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018540778","display_name":"Frederic P\u00e9rez","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Frederic Perez","raw_affiliation_strings":["Alma IT Systems, Barcelona, Spain","Alma IT Syst., Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Alma IT Systems, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Alma IT Syst., Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033511802","display_name":"Laura Lara","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laura Lara","raw_affiliation_strings":["LAP GmbH Laser Applikationen, Lueneburg, Germany"],"affiliations":[{"raw_affiliation_string":"LAP GmbH Laser Applikationen, Lueneburg, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082433089","display_name":"Mario Ceresa","orcid":"https://orcid.org/0000-0002-2410-0212"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mario Ceresa","raw_affiliation_strings":["Alma IT Systems, Barcelona, Spain","Alma IT Syst., Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Alma IT Systems, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Alma IT Syst., Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044907364","display_name":"Noem\u00ed Carranza","orcid":"https://orcid.org/0000-0002-5193-2540"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Noemi Carranza","raw_affiliation_strings":["Alma IT Systems, Barcelona, Spain","Alma IT Syst., Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Alma IT Systems, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Alma IT Syst., Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043307094","display_name":"Javier Herrero Jover","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Javier Herrero Jover","raw_affiliation_strings":["Alma IT Systems, Barcelona, Spain","Alma IT Syst., Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Alma IT Systems, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Alma IT Syst., Barcelona, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021143022","display_name":"Miguel \u00c1. Gonz\u00e1lez Ballester","orcid":"https://orcid.org/0000-0002-9227-6826"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Miguel A. Gonzalez Ballester","raw_affiliation_strings":["Alma IT Systems, Barcelona, Spain","Alma IT Syst., Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Alma IT Systems, Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Alma IT Syst., Barcelona, Spain","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5031514867"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4072,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.80150237,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"64","issue":null,"first_page":"3016","last_page":"3019"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9702000021934509,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-dish","display_name":"Petri dish","score":0.9164505004882812},{"id":"https://openalex.org/keywords/agar","display_name":"Agar","score":0.6995800137519836},{"id":"https://openalex.org/keywords/bacterial-colony","display_name":"Bacterial colony","score":0.6155528426170349},{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.597321629524231},{"id":"https://openalex.org/keywords/agar-plate","display_name":"Agar plate","score":0.5678499937057495},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5163573026657104},{"id":"https://openalex.org/keywords/counting-process","display_name":"Counting process","score":0.44100216031074524},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3985058665275574},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38850659132003784},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.3440566062927246},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.3422391414642334},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18309170007705688},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.0788714587688446}],"concepts":[{"id":"https://openalex.org/C146763376","wikidata":"https://www.wikidata.org/wiki/Q81714","display_name":"Petri dish","level":2,"score":0.9164505004882812},{"id":"https://openalex.org/C2778660310","wikidata":"https://www.wikidata.org/wiki/Q177998","display_name":"Agar","level":3,"score":0.6995800137519836},{"id":"https://openalex.org/C2994463342","wikidata":"https://www.wikidata.org/wiki/Q354341","display_name":"Bacterial colony","level":3,"score":0.6155528426170349},{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.597321629524231},{"id":"https://openalex.org/C62643968","wikidata":"https://www.wikidata.org/wiki/Q574816","display_name":"Agar plate","level":3,"score":0.5678499937057495},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5163573026657104},{"id":"https://openalex.org/C2781104640","wikidata":"https://www.wikidata.org/wiki/Q11827313","display_name":"Counting process","level":2,"score":0.44100216031074524},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3985058665275574},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38850659132003784},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3440566062927246},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3422391414642334},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18309170007705688},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0788714587688446},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000362","descriptor_name":"Agar","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000362","descriptor_name":"Agar","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000362","descriptor_name":"Agar","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015169","descriptor_name":"Colony Count, Microbial","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015169","descriptor_name":"Colony Count, Microbial","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015169","descriptor_name":"Colony Count, Microbial","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2013.6610175","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2013.6610175","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:24110362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24110362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1906638304","https://openalex.org/W2070604790","https://openalex.org/W2105038642","https://openalex.org/W2106783668","https://openalex.org/W2121296593","https://openalex.org/W2295936755"],"related_works":["https://openalex.org/W2048211489","https://openalex.org/W4245195896","https://openalex.org/W4253934384","https://openalex.org/W4242233046","https://openalex.org/W4210543851","https://openalex.org/W3010898643","https://openalex.org/W4213130226","https://openalex.org/W4238001047","https://openalex.org/W3108894835","https://openalex.org/W3135416100"],"abstract_inverted_index":{"Agar":[0,21],"plates":[1,22,140],"are":[2,25,44],"widely":[3],"used":[4,26],"in":[5,12,28,31,56,76,82,103,138],"the":[6,35,48,57,83,88,92,96,104,108,118,121,143],"biomedical":[7],"field":[8],"as":[9],"a":[10,66,128],"medium":[11],"which":[13],"to":[14,33,71],"artificially":[15],"grow":[16],"bacteria,":[17],"algae":[18],"or":[19],"fungi.":[20],"(Petri":[23],"dishes)":[24],"routinely":[27],"microbiology":[29],"laboratories":[30],"order":[32],"identify":[34],"type":[36,51],"of":[37,52,62,87,90,98,107,113,120,136,145],"micro-organism":[38],"responsible":[39],"for":[40,131],"infections.":[41],"Such":[42],"diagnoses":[43],"based":[45],"on":[46],"counting":[47,78,93,123,149],"number":[49],"and":[50,100,134],"bacterial":[53,63,122,147],"colonies":[54,64],"growing":[55],"Petri":[58],"dish.":[59],"The":[60],"count":[61],"is":[65,95],"time":[67],"consuming":[68],"task":[69],"prone":[70],"human":[72],"error,":[73],"so":[74],"interest":[75],"automated":[77],"systems":[79],"has":[80],"increased":[81],"recent":[84],"years.":[85],"One":[86],"difficulties":[89],"automatizing":[91],"process":[94],"presence":[97],"markers":[99,115],"annotations":[101,137],"made":[102],"lower":[105],"part":[106],"agar":[109,139],"plate.":[110],"Efficient":[111],"removal":[112,135],"such":[114],"can":[116],"increase":[117],"accuracy":[119],"system.":[124],"This":[125],"article":[126],"introduces":[127],"fast":[129],"method":[130],"detection,":[132],"segmentation":[133],"that":[141],"improves":[142],"results":[144],"existing":[146],"colony":[148],"algorithms.":[150]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
