{"id":"https://openalex.org/W2086022632","doi":"https://doi.org/10.1109/embc.2013.6609567","title":"Hierarchical clustering combining numerical and biological similarities for gene expression data classification","display_name":"Hierarchical clustering combining numerical and biological similarities for gene expression data classification","publication_year":2013,"publication_date":"2013-07-01","ids":{"openalex":"https://openalex.org/W2086022632","doi":"https://doi.org/10.1109/embc.2013.6609567","mag":"2086022632","pmid":"https://pubmed.ncbi.nlm.nih.gov/24109754"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2013.6609567","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2013.6609567","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2117/86695","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024500734","display_name":"Mattia Bosio","orcid":"https://orcid.org/0000-0001-8989-4220"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mattia Bosio","raw_affiliation_strings":["Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027200081","display_name":"Philippe Salembier","orcid":"https://orcid.org/0000-0001-8884-9604"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Philippe Salembier","raw_affiliation_strings":["Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073033661","display_name":"Pau Bellot","orcid":"https://orcid.org/0000-0001-9503-4710"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pau Bellot","raw_affiliation_strings":["Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103260465","display_name":"Albert Oliveras","orcid":"https://orcid.org/0000-0003-1574-5622"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Albert Oliveras-Verges","raw_affiliation_strings":["Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Signal Theory and Communications, Technical University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Signal Theor. & Commun., Tech. Univ. of Catalonia (UPC), Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I9617848"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.18590522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2013","issue":null,"first_page":"584","last_page":"587"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7370709180831909},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7010611295700073},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6714955568313599},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.6421958208084106},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5940430760383606},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5821517109870911},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.5209192633628845},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4790983498096466},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.46520787477493286},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4494948089122772},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.44343894720077515},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4338008761405945},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.392764151096344},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23618677258491516},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09068623185157776}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7370709180831909},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7010611295700073},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6714955568313599},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.6421958208084106},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5940430760383606},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5821517109870911},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.5209192633628845},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4790983498096466},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.46520787477493286},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4494948089122772},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.44343894720077515},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4338008761405945},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.392764151096344},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23618677258491516},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09068623185157776},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/embc.2013.6609567","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2013.6609567","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:24109754","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24109754","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":"Journal Article"},{"id":"pmh:oai:upcommons.upc.edu:2117/86695","is_oa":false,"landing_page_url":"https://hdl.handle.net/2117/86695","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Conference report"},{"id":"pmh:oai:recercat.cat:2072/338702","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/86695","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:recercat.cat:2072/338702","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/86695","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1549823682","https://openalex.org/W1562135275","https://openalex.org/W1975259369","https://openalex.org/W1980431206","https://openalex.org/W2020492692","https://openalex.org/W2021560851","https://openalex.org/W2057720571","https://openalex.org/W2080948989","https://openalex.org/W2098257125","https://openalex.org/W2109553965","https://openalex.org/W2130410032","https://openalex.org/W2168693035","https://openalex.org/W2403487957","https://openalex.org/W3101533025"],"related_works":["https://openalex.org/W372138008","https://openalex.org/W2307569040","https://openalex.org/W2131941936","https://openalex.org/W2366067673","https://openalex.org/W2060096282","https://openalex.org/W4237581822","https://openalex.org/W2541393756","https://openalex.org/W2887634402","https://openalex.org/W2385643360","https://openalex.org/W4375944314"],"abstract_inverted_index":{"High":[0],"throughput":[1],"data":[2],"analysis":[3,46,58,185],"is":[4,19,71,83,90,101,122],"a":[5,67,104],"challenging":[6],"problem":[7],"due":[8],"to":[9,20,44,73,85,123],"the":[10,39,57,61,75,93,116,150,153,164,168,173,178],"vast":[11],"amount":[12],"of":[13,35,115,152],"available":[14,142],"data.":[15],"A":[16,32],"major":[17],"concern":[18],"develop":[21],"algorithms":[22],"that":[23],"provide":[24],"accurate":[25],"numerical":[26,95,117],"predictions":[27],"and":[28,118,129,171],"biologically":[29],"relevant":[30],"results.":[31,47,63],"wide":[33],"variety":[34],"tools":[36],"exist":[37],"in":[38,103],"literature":[40],"using":[41],"biological":[42,54,87,119,174],"knowledge":[43,55,68,82,157],"evaluate":[45],"Only":[48],"recently,":[49],"some":[50],"works":[51],"have":[52,146],"included":[53],"inside":[56],"process":[59,107],"improving":[60,167],"prediction":[62],"In":[64],"this":[65],"work,":[66],"integration":[69,121],"scheme":[70],"proposed":[72,134],"improve":[74],"microarray":[76],"classification":[77],"results":[78,145,169],"from":[79],"[3].":[80],"Biological":[81],"used":[84,102],"infer":[86],"similarity":[88,99],"which":[89],"combined":[91],"with":[92,149,181],"classical":[94],"similarity.":[96],"The":[97,113,133,144,156],"resulting":[98],"measure":[100],"hierarchical":[105],"clustering":[106],"producing":[108],"new":[109],"features":[110],"called":[111],"metagenes.":[112],"goal":[114],"similarities":[120],"produce":[124],"metagenes":[125],"involving":[126],"more":[127],"useful":[128],"significant":[130],"gene":[131,183],"signatures.":[132],"algorithm":[135],"has":[136,159],"been":[137,147],"tested":[138],"on":[139],"7":[140],"publicly":[141],"datasets.":[143],"compared":[148],"state":[151],"art":[154],"method.":[155],"inclusion":[158],"proven":[160],"beneficial":[161],"both":[162],"for":[163,172],"predictive":[165],"ability,":[166],"repeatability,":[170],"relevance":[175],"after":[176],"evaluating":[177],"produced":[179],"signatures":[180],"two":[182],"list":[184],"tools.":[186]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
