{"id":"https://openalex.org/W2077505546","doi":"https://doi.org/10.1109/embc.2012.6347438","title":"Network-based enrichment analysis of gene expression through protein-protein interaction data","display_name":"Network-based enrichment analysis of gene expression through protein-protein interaction data","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W2077505546","doi":"https://doi.org/10.1109/embc.2012.6347438","mag":"2077505546","pmid":"https://pubmed.ncbi.nlm.nih.gov/23367373"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2012.6347438","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2012.6347438","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/2117/17221","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044629599","display_name":"R. Massanet-Vila","orcid":null},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"R. Massanet-Vila","raw_affiliation_strings":["Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain. raimon.massanet@upc.edu","Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain. raimon.massanet@upc.edu","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062480768","display_name":"Francesc Fern\u00e1ndez-Albert","orcid":"https://orcid.org/0000-0001-5561-0701"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francesc Fernandez Albert","raw_affiliation_strings":["Department of Sistems Engineering, Automatics and Industrial Informatics, UPC-Technical University of Catalonia, Barcelona, Spain","Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Sistems Engineering, Automatics and Industrial Informatics, UPC-Technical University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065446322","display_name":"P. Caminal","orcid":"https://orcid.org/0000-0002-2301-8153"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"P. Caminal","raw_affiliation_strings":["Department of Sistems Engineering, Automatics and Industrial Informatics, UPC-Technical University of Catalonia, Barcelona, Spain","Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Sistems Engineering, Automatics and Industrial Informatics, UPC-Technical University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":null,"display_name":"A. Perera","orcid":null},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Perera","raw_affiliation_strings":["Department of Sistems Engineering, Automatics and Industrial Informatics, UPC-Technical University of Catalonia, Barcelona, Spain","Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Sistems Engineering, Automatics and Industrial Informatics, UPC-Technical University of Catalonia, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. of Sistems Engineering, Automatics and Industrial Informatics, Technical University of Catalonia (UPC), Pau Gargallo 5, 08028, Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I9617848"],"apc_list":null,"apc_paid":null,"fwci":0.9642,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.7908559,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":null,"first_page":"6317","last_page":"6320"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6410000324249268},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.6119197607040405},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5520183444023132},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.5053790211677551},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.47713375091552734},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.47254014015197754},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4239221215248108},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3798808455467224},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3551482558250427},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3226741850376129},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3197769522666931},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07085460424423218}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6410000324249268},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.6119197607040405},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5520183444023132},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.5053790211677551},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.47713375091552734},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.47254014015197754},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4239221215248108},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3798808455467224},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3551482558250427},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3226741850376129},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3197769522666931},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07085460424423218},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/embc.2012.6347438","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2012.6347438","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:23367373","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23367373","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":"Journal Article"},{"id":"pmh:oai:upcommons.upc.edu:2117/17221","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/17221","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference report"}],"best_oa_location":{"id":"pmh:oai:upcommons.upc.edu:2117/17221","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/17221","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference report"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1799444595","https://openalex.org/W1965843937","https://openalex.org/W1999429594","https://openalex.org/W1999744363","https://openalex.org/W2042316019","https://openalex.org/W2060460012","https://openalex.org/W2098264959","https://openalex.org/W2122863289","https://openalex.org/W2125414037","https://openalex.org/W2130410032","https://openalex.org/W2159731793","https://openalex.org/W2160431037","https://openalex.org/W6608852248","https://openalex.org/W6678161268"],"related_works":["https://openalex.org/W2506292322","https://openalex.org/W4283209547","https://openalex.org/W4367627632","https://openalex.org/W653452717","https://openalex.org/W2554445088","https://openalex.org/W2621003306","https://openalex.org/W2335661150","https://openalex.org/W1595456161","https://openalex.org/W4210478379","https://openalex.org/W4398249066"],"abstract_inverted_index":{"High-throughput":[0],"analysis":[1],"of":[2,33,44,47],"gene":[3,25,37],"expression":[4,38],"data":[5],"is":[6],"subject":[7],"to":[8,30,50],"technological":[9],"and":[10],"statistical":[11],"issues":[12],"that":[13,57],"confuse":[14],"the":[15,31,42,45,68,77],"underlying":[16],"expression-condition":[17],"associations.":[18],"In":[19],"this":[20],"contribution":[21],"a":[22,34],"network-based":[23],"candidate":[24],"prioritization":[26],"strategy":[27],"was":[28],"applied":[29],"enrichment":[32],"publicly":[35],"available":[36],"dataset,":[39],"focused":[40],"on":[41],"study":[43,70],"mechanosensitivity":[46],"genes":[48,59],"exposed":[49],"altered":[51],"pulmonary":[52,83],"matrix":[53],"stiffness.":[54],"Results":[55],"suggested":[56],"some":[58],"which":[60],"had":[61],"not":[62],"been":[63],"taken":[64],"into":[65],"account":[66],"in":[67,76],"original":[69],"could":[71],"have":[72],"an":[73],"important":[74],"role":[75],"processes":[78],"causing,":[79],"or":[80],"affected":[81],"by,":[82],"fibrosis.":[84]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-06-24T00:00:00"}
