{"id":"https://openalex.org/W2089870141","doi":"https://doi.org/10.1109/embc.2012.6347250","title":"Visualization of high resolution spatial mass spectrometric data during acquisition","display_name":"Visualization of high resolution spatial mass spectrometric data during acquisition","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W2089870141","doi":"https://doi.org/10.1109/embc.2012.6347250","mag":"2089870141","pmid":"https://pubmed.ncbi.nlm.nih.gov/23367185"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2012.6347250","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2012.6347250","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062544458","display_name":"Mathew Thomas","orcid":"https://orcid.org/0000-0003-3322-8768"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"M. Thomas","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA 99354, USA. mathew.thomas@pnnl.gov","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA 99354, USA. mathew.thomas@pnnl.gov","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060640298","display_name":"Brandi S. Heath","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. S. Heath","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067234032","display_name":"Julia Laskin","orcid":"https://orcid.org/0000-0002-4533-9644"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Laskin","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100440906","display_name":"Dongsheng Li","orcid":"https://orcid.org/0000-0002-1030-146X"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongsheng Li","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111859950","display_name":"E. Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Liu","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103185850","display_name":"Hui Kang","orcid":"https://orcid.org/0000-0002-1744-8763"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Hui","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022743648","display_name":"Andrew P. Kuprat","orcid":"https://orcid.org/0000-0003-4159-918X"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. P. Kuprat","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038437071","display_name":"Kerstin Kleese van Dam","orcid":"https://orcid.org/0000-0002-5794-7620"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kerstin Kleese van Dam","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078550956","display_name":"James P. Carson","orcid":"https://orcid.org/0000-0001-9009-5645"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. P. Carson","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratory, Richland, WA, 99354, USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, 99354, USA","institution_ids":["https://openalex.org/I142606810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5062544458"],"corresponding_institution_ids":["https://openalex.org/I142606810"],"apc_list":null,"apc_paid":null,"fwci":1.2616,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.76953816,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2012","issue":null,"first_page":"5545","last_page":"5548"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12073","display_name":"Isotope Analysis in Ecology","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7722893953323364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7072771787643433},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6854074597358704},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5214264392852783},{"id":"https://openalex.org/keywords/image-resolution","display_name":"Image resolution","score":0.5140810608863831},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5103902220726013},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.45384401082992554},{"id":"https://openalex.org/keywords/software-visualization","display_name":"Software visualization","score":0.41451969742774963},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35611575841903687},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.33894050121307373},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.27932196855545044},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25621068477630615},{"id":"https://openalex.org/keywords/component-based-software-engineering","display_name":"Component-based software engineering","score":0.16971632838249207}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7722893953323364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7072771787643433},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6854074597358704},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5214264392852783},{"id":"https://openalex.org/C205372480","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Image resolution","level":2,"score":0.5140810608863831},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5103902220726013},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.45384401082992554},{"id":"https://openalex.org/C4379982","wikidata":"https://www.wikidata.org/wiki/Q1273511","display_name":"Software visualization","level":5,"score":0.41451969742774963},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35611575841903687},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.33894050121307373},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.27932196855545044},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25621068477630615},{"id":"https://openalex.org/C174683762","wikidata":"https://www.wikidata.org/wiki/Q609588","display_name":"Component-based software engineering","level":4,"score":0.16971632838249207},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc.2012.6347250","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2012.6347250","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:23367185","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23367185","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1968280571","https://openalex.org/W1968863791","https://openalex.org/W1969198161","https://openalex.org/W1981211088","https://openalex.org/W2014186056","https://openalex.org/W2073470877","https://openalex.org/W2080669227","https://openalex.org/W2093943798"],"related_works":["https://openalex.org/W4285411112","https://openalex.org/W2085033728","https://openalex.org/W2171299904","https://openalex.org/W4289655544","https://openalex.org/W2044092692","https://openalex.org/W2547665164","https://openalex.org/W3103111272","https://openalex.org/W4293280164","https://openalex.org/W171991278","https://openalex.org/W2058045376"],"abstract_inverted_index":{"Mass":[0],"Spectrometric":[1],"Imaging":[2],"(MSI)":[3],"allows":[4],"the":[5,54,59,73,81,84,88,99,118,136,143,146,155],"generation":[6,74],"of":[7,19,25,48,58,75,83,90,101,106,120,145,154],"2D":[8,76],"ion":[9],"density":[10],"maps":[11,77,94],"that":[12,141],"help":[13],"visualize":[14],"molecules":[15],"present":[16],"in":[17,32,159],"sections":[18],"tissues":[20],"and":[21,28,35,46,56,65,87,157],"cells.":[22],"The":[23],"combination":[24],"spatial":[26,67],"resolution":[27,30],"mass":[29,68],"results":[31],"very":[33],"large":[34],"complex":[36],"data":[37,148],"sets.":[38],"New":[39],"capabilities":[40,116],"are":[41,95],"necessary":[42],"for":[43,78,109],"efficient":[44],"analysis":[45],"interpretation":[47],"this":[49],"data.":[50,70],"This":[51,128],"work":[52],"details":[53],"development":[55],"application":[57],"capability":[60],"to":[61],"process,":[62],"visualize,":[63],"query,":[64],"analyze":[66],"spectrometry":[69],"Applications":[71],"include":[72],"selected":[79,110],"spectra,":[80],"manipulation":[82],"heat":[85],"maps,":[86],"identification":[89],"spectral":[91],"peaks.":[92],"Heat":[93],"generated":[96],"by":[97],"projecting":[98],"sum":[100],"intensity":[102],"vs.":[103],"time":[104],"spectra":[105],"each":[107],"pixel":[108],"m/z":[111],"value":[112],"or":[113],"range.":[114],"These":[115],"take":[117],"form":[119],"a":[121,132],"new":[122],"interactive":[123],"software":[124,129],"toolkit,":[125],"MSI":[126],"QuickView.":[127],"approach":[130],"is":[131],"significant":[133],"advance":[134],"over":[135],"previous":[137],"state-of-the":[138],"art":[139],"methods":[140],"required":[142],"conversion":[144],"RAW":[147],"using":[149],"one":[150],"software,":[151],"manual":[152],"assembly":[153],"data,":[156],"visualization":[158],"another":[160],"software.":[161]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
