{"id":"https://openalex.org/W1981576982","doi":"https://doi.org/10.1109/embc.2012.6346240","title":"GPU acceleration of optical mapping algorithm for cardiac electrophysiology","display_name":"GPU acceleration of optical mapping algorithm for cardiac electrophysiology","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W1981576982","doi":"https://doi.org/10.1109/embc.2012.6346240","mag":"1981576982","pmid":"https://pubmed.ncbi.nlm.nih.gov/23366201"},"language":"en","primary_location":{"id":"doi:10.1109/embc.2012.6346240","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2012.6346240","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://escholarship.org/uc/item/2g42181t","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112279372","display_name":"Pingfan Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pingfan Meng","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, CA 92093, USA","Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055136261","display_name":"Ali Irturk","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Irturk","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California, San Diego, CA, USA","Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000231774","display_name":"Ryan Kastner","orcid":"https://orcid.org/0000-0001-9062-5570"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Kastner","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California, San Diego, CA, USA","Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033811596","display_name":"Andrew D. McCulloch","orcid":"https://orcid.org/0000-0002-1708-5675"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. McCulloch","raw_affiliation_strings":["Department of Bioengineering, University of California, San Diego, CA, USA","Department of Bioengineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Bioengineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093 USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013532679","display_name":"Jeffrey H. Omens","orcid":"https://orcid.org/0000-0002-6851-0977"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Omens","raw_affiliation_strings":["Department of Bioengineering, University of California, San Diego, CA, USA","Department of Bioengineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Bioengineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093 USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004738173","display_name":"Adam Wright","orcid":"https://orcid.org/0000-0001-6844-145X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Wright","raw_affiliation_strings":["Department of Bioengineering, University of California, San Diego, CA, USA","Department of Bioengineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Bioengineering, University of California, San Diego, 9500 Gilman Dr. La Jolla, 92093 USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2012","issue":null,"first_page":"1558","last_page":"1561"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11992","display_name":"CCD and CMOS Imaging Sensors","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12611","display_name":"Neural Networks and Reservoir Computing","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8134697675704956},{"id":"https://openalex.org/keywords/microprocessor","display_name":"Microprocessor","score":0.6298259496688843},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.6135662794113159},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.5215073227882385},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.511447548866272},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.446432501077652},{"id":"https://openalex.org/keywords/central-processing-unit","display_name":"Central processing unit","score":0.44495242834091187},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3996425271034241},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.37842702865600586},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.369629442691803}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8134697675704956},{"id":"https://openalex.org/C2780728072","wikidata":"https://www.wikidata.org/wiki/Q5297","display_name":"Microprocessor","level":2,"score":0.6298259496688843},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.6135662794113159},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.5215073227882385},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.511447548866272},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.446432501077652},{"id":"https://openalex.org/C49154492","wikidata":"https://www.wikidata.org/wiki/Q5300","display_name":"Central processing unit","level":2,"score":0.44495242834091187},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3996425271034241},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.37842702865600586},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.369629442691803},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011817","descriptor_name":"Rabbits","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011817","descriptor_name":"Rabbits","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011817","descriptor_name":"Rabbits","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022062","descriptor_name":"Electrophysiologic Techniques, Cardiac","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022062","descriptor_name":"Electrophysiologic Techniques, Cardiac","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022062","descriptor_name":"Electrophysiologic Techniques, Cardiac","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D061848","descriptor_name":"Optical Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D061848","descriptor_name":"Optical Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D061848","descriptor_name":"Optical Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/embc.2012.6346240","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc.2012.6346240","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:23366201","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23366201","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt2g42181t","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/2g42181t","pdf_url":"https://escholarship.org/uc/item/2g42181t","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"etd"},{"id":"pmh:oai:europepmc.org:2648826","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3651586","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:escholarship.org/ark:/13030/qt2g42181t","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/2g42181t","pdf_url":"https://escholarship.org/uc/item/2g42181t","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"etd"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5490215456","display_name":null,"funder_award_id":"P41 RR008605","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1981576982.pdf","grobid_xml":"https://content.openalex.org/works/W1981576982.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W183598917","https://openalex.org/W1967431907","https://openalex.org/W1982167457","https://openalex.org/W1986401921","https://openalex.org/W1991621575","https://openalex.org/W1994589684","https://openalex.org/W2009289374","https://openalex.org/W2019941324","https://openalex.org/W2020634604","https://openalex.org/W2036343507","https://openalex.org/W2044213522","https://openalex.org/W2045850425","https://openalex.org/W2092476537","https://openalex.org/W2096084052","https://openalex.org/W2098717700","https://openalex.org/W2100704737","https://openalex.org/W2101747885","https://openalex.org/W2102298614","https://openalex.org/W2105827278","https://openalex.org/W2109017390","https://openalex.org/W2166621589","https://openalex.org/W2167334577","https://openalex.org/W2172175673","https://openalex.org/W2321645591","https://openalex.org/W3213084269","https://openalex.org/W4283450746"],"related_works":["https://openalex.org/W3189307731","https://openalex.org/W2949962288","https://openalex.org/W2364686214","https://openalex.org/W1428699136","https://openalex.org/W2393707426","https://openalex.org/W2890054038","https://openalex.org/W2085873709","https://openalex.org/W2599666286","https://openalex.org/W2020279179","https://openalex.org/W2331916929"],"abstract_inverted_index":{"Optical":[0],"mapping":[1,18,79,94],"is":[2,20,88],"an":[3],"increasingly":[4],"popular":[5],"tool":[6],"for":[7],"experimentally":[8],"analyzing":[9],"the":[10,14,77,85,92,104],"electrical":[11],"activity":[12],"in":[13],"heart.":[15],"The":[16],"optical":[17,78,93],"algorithm":[19],"computationally":[21],"intense":[22],"and":[23],"consumes":[24],"a":[25,32,38,58,66,73],"considerable":[26],"amount":[27],"of":[28,46,52,76,90],"time":[29,54],"even":[30],"with":[31,57],"highly":[33],"optimized":[34,106],"program":[35,60],"running":[36,64],"on":[37,65],"state-of-the-art":[39],"multi-core":[40],"microprocessor.":[41],"For":[42],"example,":[43],"one":[44],"second":[45],"data":[47],"requires":[48],"approximately":[49],"5":[50],"minutes":[51],"computation":[53],"(3.66":[55],"FPS)":[56],"C++":[59],"parallelized":[61],"by":[62],"OpenMP":[63,105],"3.4GHz":[67],"Quad-Core":[68],"CPU.":[69],"This":[70],"article":[71],"presents":[72],"GPU":[74,86],"implementation":[75,87],"algorithm.":[80],"Our":[81],"result":[82],"indicates":[83],"that":[84],"capable":[89],"processing":[91],"video":[95],"at":[96],"578":[97],"FPS":[98],"which":[99],"achieves":[100],"157.92X":[101],"speed":[102],"against":[103],"CPU":[107],"implementation.":[108]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
