{"id":"https://openalex.org/W4402673562","doi":"https://doi.org/10.1109/e-science62913.2024.10678721","title":"Reproducibility in Named Entity Recognition: A Case Study Analysis","display_name":"Reproducibility in Named Entity Recognition: A Case Study Analysis","publication_year":2024,"publication_date":"2024-09-16","ids":{"openalex":"https://openalex.org/W4402673562","doi":"https://doi.org/10.1109/e-science62913.2024.10678721"},"language":"en","primary_location":{"id":"doi:10.1109/e-science62913.2024.10678721","is_oa":false,"landing_page_url":"https://doi.org/10.1109/e-science62913.2024.10678721","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE 20th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-04706673v1/document","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107642725","display_name":"Carlos Cuevas Villarmin","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Carlos Cuevas Villarmin","raw_affiliation_strings":["Universit&#x00E9; Paris-Saclay, CNRS,Laboratoire Interdisciplinaire des Sciences du Num&#x00E9;rique,Orsay,France,91405"],"affiliations":[{"raw_affiliation_string":"Universit&#x00E9; Paris-Saclay, CNRS,Laboratoire Interdisciplinaire des Sciences du Num&#x00E9;rique,Orsay,France,91405","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067733747","display_name":"Sarah Cohen\u2010Boulakia","orcid":"https://orcid.org/0000-0002-7439-1441"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sarah Cohen-Boulakia","raw_affiliation_strings":["Universit&#x00E9; Paris-Saclay, CNRS,Laboratoire Interdisciplinaire des Sciences du Num&#x00E9;rique,Orsay,France,91405"],"affiliations":[{"raw_affiliation_string":"Universit&#x00E9; Paris-Saclay, CNRS,Laboratoire Interdisciplinaire des Sciences du Num&#x00E9;rique,Orsay,France,91405","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069421871","display_name":"Nona Naderi","orcid":"https://orcid.org/0000-0002-1272-7640"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nona Naderi","raw_affiliation_strings":["Universit&#x00E9; Paris-Saclay, CNRS,Laboratoire Interdisciplinaire des Sciences du Num&#x00E9;rique,Orsay,France,91405"],"affiliations":[{"raw_affiliation_string":"Universit&#x00E9; Paris-Saclay, CNRS,Laboratoire Interdisciplinaire des Sciences du Num&#x00E9;rique,Orsay,France,91405","institution_ids":["https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5107642725"],"corresponding_institution_ids":["https://openalex.org/I1294671590"],"apc_list":null,"apc_paid":null,"fwci":0.3356,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.66134643,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.7949544787406921},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6448274850845337},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43506360054016113},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3748512864112854},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3231727182865143},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13061848282814026},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.12693065404891968}],"concepts":[{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.7949544787406921},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6448274850845337},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43506360054016113},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3748512864112854},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3231727182865143},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13061848282814026},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.12693065404891968}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/e-science62913.2024.10678721","is_oa":false,"landing_page_url":"https://doi.org/10.1109/e-science62913.2024.10678721","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE 20th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-04706673v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04706673","pdf_url":"https://hal.science/hal-04706673v1/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2024 IEEE 20th International Conference on e-Science (e-Science), Sep 2024, Osaka, Japan. &#x27E8;10.1109/e-Science62913.2024.10678721&#x27E9;","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-04706673v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04706673","pdf_url":"https://hal.science/hal-04706673v1/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2024 IEEE 20th International Conference on e-Science (e-Science), Sep 2024, Osaka, Japan. &#x27E8;10.1109/e-Science62913.2024.10678721&#x27E9;","raw_type":"Conference papers"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/5","display_name":"Gender equality"}],"awards":[{"id":"https://openalex.org/G4500075447","display_name":"FAIR-ification of Supplementary Data to Support Clinical Research","funder_award_id":"ANR-23-CHRO-0008","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8430433013","display_name":null,"funder_award_id":"CHIST-ERA","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8592733651","display_name":null,"funder_award_id":"ANR-22-PESN-0007","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G975799825","display_name":null,"funder_award_id":"France 2030 prog","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320338463","display_name":"CHIST-ERA","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402673562.pdf","grobid_xml":"https://content.openalex.org/works/W4402673562.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W2096765155","https://openalex.org/W2101234009","https://openalex.org/W2147994374","https://openalex.org/W2148437670","https://openalex.org/W2302501749","https://openalex.org/W2556964386","https://openalex.org/W2572857085","https://openalex.org/W2604410201","https://openalex.org/W2735984040","https://openalex.org/W2744947029","https://openalex.org/W2801356492","https://openalex.org/W2911489562","https://openalex.org/W2915429162","https://openalex.org/W2915886991","https://openalex.org/W2949176808","https://openalex.org/W2949676527","https://openalex.org/W2951299559","https://openalex.org/W2952087486","https://openalex.org/W2964179635","https://openalex.org/W2980993994","https://openalex.org/W2996284762","https://openalex.org/W3013688454","https://openalex.org/W3015468748","https://openalex.org/W3112410503","https://openalex.org/W3153873661","https://openalex.org/W3179169088","https://openalex.org/W3191402931","https://openalex.org/W3197433610","https://openalex.org/W3202289362","https://openalex.org/W4252110927","https://openalex.org/W4281740565","https://openalex.org/W4294214983","https://openalex.org/W4298110672","https://openalex.org/W4382631007","https://openalex.org/W4386462961","https://openalex.org/W6691362467","https://openalex.org/W6751752195","https://openalex.org/W6753768548","https://openalex.org/W6757409389","https://openalex.org/W6768822636","https://openalex.org/W6775341171","https://openalex.org/W6776048684","https://openalex.org/W6874377971","https://openalex.org/W7028469425"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2413717610","https://openalex.org/W1973270181","https://openalex.org/W2417696084","https://openalex.org/W2368782778","https://openalex.org/W2087830269","https://openalex.org/W2033914206","https://openalex.org/W2042327336","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Information":[0],"extraction":[1],"from":[2,60],"text":[3],"is":[4],"essential":[5],"in":[6,16,42,45,87,102],"data":[7],"science":[8],"and":[9,29,38,48,52,110,124],"artificial":[10],"intelligence,":[11],"especially":[12],"with":[13,117],"the":[14,17,50,84,99,107,118,122],"increase":[15],"number":[18],"of":[19],"scientific":[20],"articles.":[21],"Robust":[22],"methods":[23],"are":[24],"needed":[25],"to":[26,57],"structure":[27],"texts":[28],"highlight":[30],"key":[31],"information.":[32],"Named":[33],"Entity":[34],"Recognition":[35],"(NER)":[36],"identifies":[37],"classifies":[39],"major":[40],"elements":[41],"text,":[43],"aiding":[44],"dataset":[46],"structuring":[47],"tagging.Under":[49],"FAIRClinical":[51],"ShareFAIR":[53],"projects,":[54],"we":[55,81],"aimed":[56],"extract":[58],"information":[59,76],"clinical":[61,74],"trial":[62,75],"publications":[63],"using":[64],"NER":[65,90],"models.":[66],"These":[67],"models":[68],"have":[69],"been":[70],"successfully":[71],"used":[72],"for":[73],"extraction.":[77],"In":[78],"this":[79],"paper,":[80],"report":[82],"on":[83,93],"difficulties":[85,108],"met":[86],"reusing":[88],"existing":[89],"solutions,":[91],"focusing":[92],"mandatory":[94],"replicability.":[95],"This":[96],"paper":[97],"discusses":[98],"challenges":[100],"faced":[101],"replicating":[103],"a":[104],"notable":[105],"study,":[106],"encountered":[109],"lessons":[111],"learned.":[112],"It":[113],"compares":[114],"our":[115],"experiment":[116],"feedback":[119],"provided":[120],"by":[121],"literature":[123],"draws":[125],"conclusions.":[126]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
