{"id":"https://openalex.org/W4387006325","doi":"https://doi.org/10.1109/e-science58273.2023.10254895","title":"Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations","display_name":"Online Boosted Gaussian Learners for In-Situ Detection and Characterization of Protein Folding States in Molecular Dynamics Simulations","publication_year":2023,"publication_date":"2023-09-25","ids":{"openalex":"https://openalex.org/W4387006325","doi":"https://doi.org/10.1109/e-science58273.2023.10254895"},"language":"en","primary_location":{"id":"doi:10.1109/e-science58273.2023.10254895","is_oa":false,"landing_page_url":"https://doi.org/10.1109/e-science58273.2023.10254895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE 19th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091059329","display_name":"Harshita Sahni","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Harshita Sahni","raw_affiliation_strings":["Universty of New Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universty of New Mexico","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058227054","display_name":"Hector Carrillo-Cabada","orcid":"https://orcid.org/0000-0002-5823-9909"},"institutions":[{"id":"https://openalex.org/I88773910","display_name":"Intuit (United States)","ror":"https://ror.org/049mrbr98","country_code":"US","type":"company","lineage":["https://openalex.org/I88773910"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hector Carrillo-Cabada","raw_affiliation_strings":["Intuit"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intuit","institution_ids":["https://openalex.org/I88773910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056898407","display_name":"Ekaterina D. Kots","orcid":"https://orcid.org/0000-0002-7139-7098"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ekaterina Kots","raw_affiliation_strings":["Weill Cornell Medical Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medical Center","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052995286","display_name":"Silvina Ca\u00edno\u2010Lores","orcid":"https://orcid.org/0000-0002-6922-0138"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Silvina Caino-Lores","raw_affiliation_strings":["University of Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tennessee","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074559167","display_name":"Jack Marquez","orcid":"https://orcid.org/0000-0002-2673-3507"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jack Marquez","raw_affiliation_strings":["University of Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tennessee","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031941569","display_name":"Ewa Deelman","orcid":"https://orcid.org/0000-0001-5106-503X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I2800817003","display_name":"California Southern University","ror":"https://ror.org/058zz0t50","country_code":"US","type":"education","lineage":["https://openalex.org/I2800817003"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ewa Deelman","raw_affiliation_strings":["University of Southern California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southern California","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I2800817003"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082584620","display_name":"Michel A. Cuendet","orcid":"https://orcid.org/0000-0002-0754-3425"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michel Cuendet","raw_affiliation_strings":["Swiss Institute of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014370221","display_name":"Harel Weinstein","orcid":"https://orcid.org/0000-0003-3473-9818"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harel Weinstein","raw_affiliation_strings":["Weill Cornell Medical Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medical Center","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078387820","display_name":"Michela Taufer","orcid":"https://orcid.org/0000-0002-0031-6377"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michela Taufer","raw_affiliation_strings":["University of Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tennessee","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073203270","display_name":"Trilce Estrada","orcid":"https://orcid.org/0000-0001-7743-8754"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Trilce Estrada","raw_affiliation_strings":["Universty of New Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universty of New Mexico","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7508620023727417},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.62088543176651},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.546003520488739},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.4860099256038666},{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.4571596682071686},{"id":"https://openalex.org/keywords/byte","display_name":"Byte","score":0.4414879381656647},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4249017834663391},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.32088449597358704},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13055989146232605},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11416304111480713},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.10299670696258545},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09223178029060364}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7508620023727417},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.62088543176651},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.546003520488739},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.4860099256038666},{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.4571596682071686},{"id":"https://openalex.org/C43364308","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Byte","level":2,"score":0.4414879381656647},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4249017834663391},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.32088449597358704},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13055989146232605},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11416304111480713},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.10299670696258545},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09223178029060364},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/e-science58273.2023.10254895","is_oa":false,"landing_page_url":"https://doi.org/10.1109/e-science58273.2023.10254895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE 19th International Conference on e-Science (e-Science)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6485864931","display_name":null,"funder_award_id":"1757207,1741057,1841758,2138811,2223704","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307762","display_name":"International Business Machines Corporation","ror":"https://ror.org/05hh8d621"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W585413800","https://openalex.org/W1876956220","https://openalex.org/W1902027874","https://openalex.org/W2013638340","https://openalex.org/W2015583498","https://openalex.org/W2029667189","https://openalex.org/W2037672122","https://openalex.org/W2038458884","https://openalex.org/W2048822589","https://openalex.org/W2051629080","https://openalex.org/W2059180412","https://openalex.org/W2060261315","https://openalex.org/W2065281489","https://openalex.org/W2068726834","https://openalex.org/W2089277641","https://openalex.org/W2091701505","https://openalex.org/W2091707670","https://openalex.org/W2093221728","https://openalex.org/W2108196145","https://openalex.org/W2113032269","https://openalex.org/W2116339520","https://openalex.org/W2117684310","https://openalex.org/W2119512491","https://openalex.org/W2128120736","https://openalex.org/W2128873947","https://openalex.org/W2134647155","https://openalex.org/W2143592395","https://openalex.org/W2147988069","https://openalex.org/W2187089797","https://openalex.org/W2216435628","https://openalex.org/W2315297180","https://openalex.org/W2334841042","https://openalex.org/W2338711914","https://openalex.org/W2366432631","https://openalex.org/W2464998460","https://openalex.org/W2479768743","https://openalex.org/W2540372843","https://openalex.org/W2760982347","https://openalex.org/W2765861397","https://openalex.org/W2783073729","https://openalex.org/W2794868929","https://openalex.org/W2806467006","https://openalex.org/W2896638470","https://openalex.org/W2953016572","https://openalex.org/W2969567510","https://openalex.org/W2979443825","https://openalex.org/W2994669396","https://openalex.org/W3000999892","https://openalex.org/W3012232415","https://openalex.org/W3040474653","https://openalex.org/W3102548437","https://openalex.org/W3103360980","https://openalex.org/W3109525468","https://openalex.org/W3146525327","https://openalex.org/W3162048346","https://openalex.org/W3177828909","https://openalex.org/W3211841948","https://openalex.org/W4224291878","https://openalex.org/W4231415818","https://openalex.org/W4244895750","https://openalex.org/W4251708617","https://openalex.org/W4281572551","https://openalex.org/W4281619269","https://openalex.org/W4289517808","https://openalex.org/W6639055646","https://openalex.org/W6682662481","https://openalex.org/W6707795637","https://openalex.org/W6786656991"],"related_works":["https://openalex.org/W2260493136","https://openalex.org/W2113188411","https://openalex.org/W2976965029","https://openalex.org/W2382178265","https://openalex.org/W2055827177","https://openalex.org/W2072666835","https://openalex.org/W4248706500","https://openalex.org/W1999927713","https://openalex.org/W2939859775","https://openalex.org/W4252654006"],"abstract_inverted_index":{"Molecular":[0],"Dynamics":[1],"(MD)":[2],"simulations":[3,18,57],"are":[4,115],"a":[5,39,61,69,95],"crucial":[6],"tool":[7],"for":[8,138],"understanding":[9],"how":[10],"proteins":[11],"fold.":[12],"In":[13,64],"its":[14,110],"easiest":[15],"form,":[16],"MD":[17,56,83],"can":[19,31,90,132],"be":[20,32,133],"scaled":[21],"through":[22],"data":[23,51,70],"parallelism,":[24],"this":[25,65,130],"means":[26],"that":[27],"multiple":[28],"folding":[29,46,80,98],"trajectories":[30],"spawned":[33],"and":[34,112,126],"executed":[35],"in":[36,82,94],"parallel,":[37,71],"facilitating":[38],"more":[40],"efficient":[41],"exploration":[42],"of":[43,55,78,105,120,124],"the":[44,53,76,106,118,136],"protein":[45,79,97,107],"space.":[47],"However,":[48],"due":[49],"to":[50,74,86],"dependencies,":[52],"analysis":[54],"remains":[58],"largely":[59],"as":[60],"centralized":[62,102],"process.":[63],"work,":[66],"we":[67],"propose":[68],"lightweight":[72],"technique":[73,131],"learn":[75],"characteristics":[77],"states":[81,93],"simulations.":[84],"Contrary":[85],"other":[87],"methods,":[88],"ours":[89],"differentiate":[91],"relevant":[92],"single":[96],"trajectory":[99],"without":[100],"requiring":[101],"global":[103],"knowledge":[104],"dynamics.":[108],"As":[109],"processing":[111],"memory":[113],"overheads":[114],"negligible":[116],"(in":[117],"order":[119],"milliseconds":[121],"per":[122],"window":[123],"frames,":[125],"kilo":[127],"bytes":[128],"respectively)":[129],"coupled":[134],"with":[135],"simulation":[137],"in-situ":[139],"analysis.":[140]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
