{"id":"https://openalex.org/W2140380519","doi":"https://doi.org/10.1109/e-science.2009.21","title":"An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass Spectrometry","display_name":"An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass Spectrometry","publication_year":2009,"publication_date":"2009-12-01","ids":{"openalex":"https://openalex.org/W2140380519","doi":"https://doi.org/10.1109/e-science.2009.21","mag":"2140380519"},"language":"en","primary_location":{"id":"doi:10.1109/e-science.2009.21","is_oa":false,"landing_page_url":"https://doi.org/10.1109/e-science.2009.21","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 Fifth IEEE International Conference on e-Science","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113935679","display_name":"Anuj Shah","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anuj R. Shah","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112445699","display_name":"Navdeep Jaitly","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Navdeep Jaitly","raw_affiliation_strings":["University of Toronto, Toronto, Canada","University of Toronto, Toronto, On, Canada"],"affiliations":[{"raw_affiliation_string":"University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"University of Toronto, Toronto, On, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030940176","display_name":"Nino Zuljevic","orcid":"https://orcid.org/0000-0002-3175-9277"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nino Zuljevic","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005196385","display_name":"Matthew Monroe","orcid":"https://orcid.org/0000-0002-1210-7169"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew E. Monroe","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109236079","display_name":"A. Liyu","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrei Liyu","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103103454","display_name":"Ashoka D. Polpitiya","orcid":"https://orcid.org/0000-0001-5439-1375"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashoka D. Polpitiya","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089245822","display_name":"Joshua Adkins","orcid":"https://orcid.org/0000-0003-0399-0700"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua N. Adkins","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028794135","display_name":"Mikhail E. Belov","orcid":"https://orcid.org/0000-0002-7353-4789"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mikhail E. Belov","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018692662","display_name":"Gordon Anderson","orcid":"https://orcid.org/0000-0002-7066-6161"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gordon A. Anderson","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023982706","display_name":"Richard Smith","orcid":"https://orcid.org/0000-0002-2381-2349"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard D. Smith","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076208440","display_name":"Ian Gorton","orcid":"https://orcid.org/0000-0002-5617-0258"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ian Gorton","raw_affiliation_strings":["Pacific Northwest National Laboratory, Richland, WA, USA","Pacific Northwest National Laboratories Richland WA USA"],"affiliations":[{"raw_affiliation_string":"Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]},{"raw_affiliation_string":"Pacific Northwest National Laboratories Richland WA USA","institution_ids":["https://openalex.org/I142606810"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5113935679"],"corresponding_institution_ids":["https://openalex.org/I142606810"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.14060081,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":null,"first_page":"88","last_page":"93"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7961219549179077},{"id":"https://openalex.org/keywords/data-acquisition","display_name":"Data acquisition","score":0.6305456161499023},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6049298644065857},{"id":"https://openalex.org/keywords/data-collection","display_name":"Data collection","score":0.5149396061897278},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.4375477135181427},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4182986617088318},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4163588285446167},{"id":"https://openalex.org/keywords/real-time-computing","display_name":"Real-time computing","score":0.34478676319122314}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7961219549179077},{"id":"https://openalex.org/C163985040","wikidata":"https://www.wikidata.org/wiki/Q1172399","display_name":"Data acquisition","level":2,"score":0.6305456161499023},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6049298644065857},{"id":"https://openalex.org/C133462117","wikidata":"https://www.wikidata.org/wiki/Q4929239","display_name":"Data collection","level":2,"score":0.5149396061897278},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.4375477135181427},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4182986617088318},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4163588285446167},{"id":"https://openalex.org/C79403827","wikidata":"https://www.wikidata.org/wiki/Q3988","display_name":"Real-time computing","level":1,"score":0.34478676319122314},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/e-science.2009.21","is_oa":false,"landing_page_url":"https://doi.org/10.1109/e-science.2009.21","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 Fifth IEEE International Conference on e-Science","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W105234211","https://openalex.org/W1531306784","https://openalex.org/W1579072698","https://openalex.org/W1597883912","https://openalex.org/W1970696723","https://openalex.org/W1982535455","https://openalex.org/W1983255121","https://openalex.org/W1984596349","https://openalex.org/W2004843282","https://openalex.org/W2010548624","https://openalex.org/W2014186056","https://openalex.org/W2023096047","https://openalex.org/W2026465178","https://openalex.org/W2038249420","https://openalex.org/W2073470877","https://openalex.org/W2075036506","https://openalex.org/W2075060008","https://openalex.org/W2091375086","https://openalex.org/W2094784096","https://openalex.org/W2101938218","https://openalex.org/W2104315541","https://openalex.org/W2127230663","https://openalex.org/W2130706354","https://openalex.org/W2147830145","https://openalex.org/W2165460636","https://openalex.org/W2171489309","https://openalex.org/W6604274132"],"related_works":["https://openalex.org/W2280422768","https://openalex.org/W3143197806","https://openalex.org/W4390608645","https://openalex.org/W4252555497","https://openalex.org/W4247566972","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W4206777497","https://openalex.org/W3121175838"],"abstract_inverted_index":{"Independent,":[0],"greedy":[1],"collection":[2,44,133,160],"of":[3,13,30,45,49,120,134,153,161],"data":[4,16,36,121],"events":[5,122,135],"using":[6],"simple":[7],"heuristics":[8],"results":[9],"in":[10,18],"massive":[11],"over-sampling":[12],"the":[14,105,132,143,151,158],"prominent":[15],"features":[17],"large-scale":[19,56],"studies":[20],"over":[21],"what":[22],"should":[23],"be":[24],"achievable":[25],"through":[26],"\u00bfintelligent\",":[27],"online":[28,61,97,118],"acquisition":[29],"such":[31],"data.":[32],"As":[33],"a":[34,43,46,54,80,114],"result,":[35],"generated":[37,146],"are":[38,125],"more":[39],"aptly":[40],"described":[41],"as":[42,123],"large":[47],"number":[48],"small":[50],"experiments":[51],"rather":[52],"than":[53],"true":[55],"experiment.":[57],"Nevertheless,":[58],"achieving":[59],"\u00bfintelligent\u00bf,":[60],"control":[62,98],"requires":[63],"tight":[64],"interplay":[65],"between":[66],"state-of-the-art,":[67],"data-intensive":[68],"computing":[69],"infrastructure":[70],"developments":[71],"and":[72,99,127],"analytical":[73],"algorithms.":[74],"In":[75],"this":[76,112],"paper,":[77],"we":[78,139],"propose":[79],"Software":[81],"Architecture":[82],"for":[83],"Mass":[84],"spectrometry-based":[85],"Proteomics":[86],"coupled":[87],"with":[88],"Liquid":[89],"chromatography":[90],"Experiments":[91],"(SAMPLE)":[92],"to":[93,102,130,141,156],"develop":[94],"an":[95,137,148],"\u00bfintelligent\u00bf":[96],"analysis":[100,119],"system":[101],"significantly":[103],"enhance":[104],"information":[106,144],"content":[107,145],"from":[108],"each":[109],"sensor":[110],"(in":[111],"case,":[113],"mass":[115],"spectrometer).":[116],"Using":[117],"they":[124],"collected":[126],"decision":[128],"theory":[129],"optimize":[131,157],"during":[136,147],"experiment,":[138],"aim":[140],"maximize":[142],"experiment":[149],"by":[150],"use":[152],"pre-existing":[154],"knowledge":[155],"dynamic":[159],"events.":[162]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
