{"id":"https://openalex.org/W4200435100","doi":"https://doi.org/10.1109/dicta52665.2021.9647415","title":"Efficient DNN-Based Classification of Whole Slide Gram Stain Images for Microbiology","display_name":"Efficient DNN-Based Classification of Whole Slide Gram Stain Images for Microbiology","publication_year":2021,"publication_date":"2021-11-01","ids":{"openalex":"https://openalex.org/W4200435100","doi":"https://doi.org/10.1109/dicta52665.2021.9647415"},"language":"en","primary_location":{"id":"doi:10.1109/dicta52665.2021.9647415","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dicta52665.2021.9647415","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 Digital Image Computing: Techniques and Applications (DICTA)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072549960","display_name":"Sarah Alhammad","orcid":"https://orcid.org/0000-0002-5796-0665"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sarah Alhammad","raw_affiliation_strings":["The University of Queensland,Brisbane,Australia","The University of Queensland, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Queensland,Brisbane,Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University of Queensland, Brisbane, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101715293","display_name":"Kun Zhao","orcid":"https://orcid.org/0000-0003-3193-8467"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kun Zhao","raw_affiliation_strings":["The University of Queensland,Brisbane,Australia","The University of Queensland, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Queensland,Brisbane,Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University of Queensland, Brisbane, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111971711","display_name":"Anthony Jennings","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150547","display_name":"Sullivan Nicolaides Pathology","ror":"https://ror.org/04rdvs602","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210150547"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anthony Jennings","raw_affiliation_strings":["Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","institution_ids":["https://openalex.org/I4210150547"]},{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia","institution_ids":["https://openalex.org/I4210150547"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111680627","display_name":"Peter Hobson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150547","display_name":"Sullivan Nicolaides Pathology","ror":"https://ror.org/04rdvs602","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210150547"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Peter Hobson","raw_affiliation_strings":["Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","institution_ids":["https://openalex.org/I4210150547"]},{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia","institution_ids":["https://openalex.org/I4210150547"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111990430","display_name":"Daniel F. Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150547","display_name":"Sullivan Nicolaides Pathology","ror":"https://ror.org/04rdvs602","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210150547"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Daniel F. Smith","raw_affiliation_strings":["Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","institution_ids":["https://openalex.org/I4210150547"]},{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia","institution_ids":["https://openalex.org/I4210150547"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019452857","display_name":"Brett Baker","orcid":"https://orcid.org/0000-0002-7012-4442"},"institutions":[{"id":"https://openalex.org/I4210150547","display_name":"Sullivan Nicolaides Pathology","ror":"https://ror.org/04rdvs602","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210150547"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Brett Baker","raw_affiliation_strings":["Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","institution_ids":["https://openalex.org/I4210150547"]},{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia","institution_ids":["https://openalex.org/I4210150547"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049164716","display_name":"Justin Staweno","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150547","display_name":"Sullivan Nicolaides Pathology","ror":"https://ror.org/04rdvs602","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210150547"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Justin Staweno","raw_affiliation_strings":["Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills,Queensland,Australia","institution_ids":["https://openalex.org/I4210150547"]},{"raw_affiliation_string":"Sullivan Nicolaides Pathology Bowen Hills, Queensland, Australia","institution_ids":["https://openalex.org/I4210150547"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058539660","display_name":"Brian C. Lovell","orcid":"https://orcid.org/0000-0001-6722-1754"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Brian C. Lovell","raw_affiliation_strings":["The University of Queensland,Brisbane,Australia","The University of Queensland, Brisbane, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Queensland,Brisbane,Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"The University of Queensland, Brisbane, Australia","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":5.8712,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.9612695,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"01","last_page":"08"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6899828910827637},{"id":"https://openalex.org/keywords/stain","display_name":"Stain","score":0.526162326335907},{"id":"https://openalex.org/keywords/telepathology","display_name":"Telepathology","score":0.524523138999939},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5199852585792542},{"id":"https://openalex.org/keywords/gram-staining","display_name":"Gram staining","score":0.5189354419708252},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.5032429099082947},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.4394550919532776},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3750593364238739},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2946440875530243},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20973557233810425},{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.16466763615608215},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.1576234996318817}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6899828910827637},{"id":"https://openalex.org/C2781294515","wikidata":"https://www.wikidata.org/wiki/Q2733470","display_name":"Stain","level":3,"score":0.526162326335907},{"id":"https://openalex.org/C91803115","wikidata":"https://www.wikidata.org/wiki/Q6140603","display_name":"Telepathology","level":4,"score":0.524523138999939},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5199852585792542},{"id":"https://openalex.org/C205501099","wikidata":"https://www.wikidata.org/wiki/Q188990","display_name":"Gram staining","level":3,"score":0.5189354419708252},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.5032429099082947},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.4394550919532776},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3750593364238739},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2946440875530243},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20973557233810425},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.16466763615608215},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.1576234996318817},{"id":"https://openalex.org/C2779891985","wikidata":"https://www.wikidata.org/wiki/Q46994","display_name":"Telemedicine","level":3,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/dicta52665.2021.9647415","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dicta52665.2021.9647415","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 Digital Image Computing: Techniques and Applications (DICTA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1578224510","https://openalex.org/W1581308668","https://openalex.org/W1686810756","https://openalex.org/W2097117768","https://openalex.org/W2105248842","https://openalex.org/W2161969291","https://openalex.org/W2163352848","https://openalex.org/W2194775991","https://openalex.org/W2253429366","https://openalex.org/W2264887978","https://openalex.org/W2302302587","https://openalex.org/W2344147939","https://openalex.org/W2346062110","https://openalex.org/W2592929672","https://openalex.org/W2618530766","https://openalex.org/W2736827300","https://openalex.org/W2751723768","https://openalex.org/W2768412660","https://openalex.org/W2790701475","https://openalex.org/W2823927197","https://openalex.org/W2900118953","https://openalex.org/W2906774465","https://openalex.org/W2909778238","https://openalex.org/W2919115771","https://openalex.org/W2991430586","https://openalex.org/W3042024476","https://openalex.org/W3100003598","https://openalex.org/W4295312788","https://openalex.org/W4297775537","https://openalex.org/W6634553569","https://openalex.org/W6637373629","https://openalex.org/W6737664043","https://openalex.org/W6766978945","https://openalex.org/W6769160632"],"related_works":["https://openalex.org/W4252440964","https://openalex.org/W2078597196","https://openalex.org/W2168460514","https://openalex.org/W2292219612","https://openalex.org/W2338609790","https://openalex.org/W4386945467","https://openalex.org/W4229759000","https://openalex.org/W2105967608","https://openalex.org/W2166507419","https://openalex.org/W2547375709"],"abstract_inverted_index":{"The":[0,15,204],"interpretation":[1],"of":[2,96,169,189],"conventional":[3,52,83],"glass":[4],"Gram":[5,24,123,147,159],"stain":[6,124,148],"microscopy":[7],"slides":[8,25],"is":[9,21,37,110],"both":[10,100,177],"subjective":[11],"and":[12,98,102,136,164,173,180,202],"time":[13],"consuming.":[14],"first":[16],"step":[17],"towards":[18],"Digital":[19],"Pathology":[20,197],"to":[22,41,78,113,119,127,153,157,165],"convert":[23],"into":[26],"Whole":[27],"Slide":[28],"Images":[29],"(WSIs)":[30],"-":[31],"this":[32],"image":[33,174],"capture":[34],"process":[35],"itself":[36],"extremely":[38,76],"challenging":[39],"due":[40],"the":[42,94,106,120,167,214],"need":[43],"for":[44,51],"x":[45,220],"100":[46],"objectives":[47],"with":[48,240],"oil":[49,226],"immersion":[50],"microscopy.":[53],"With":[54],"high":[55,241],"volume":[56],"pathology":[57,84,107,129],"laboratories,":[58],"having":[59],"an":[60],"Artificial":[61],"Intelligence":[62],"(AI)":[63],"system":[64,89],"based":[65],"on":[66,72,146,176,185],"deep":[67,155],"neural":[68],"networks":[69],"(DNNs)":[70],"operating":[71],"WSIs":[73,211],"could":[74],"be":[75],"beneficial":[77],"alleviate":[79],"problems":[80],"faced":[81],"by":[82,194,213],"at":[85],"scale.":[86],"Such":[87],"a":[88,186,219,232],"would":[90],"ensure":[91],"accuracy,":[92],"reduce":[93],"workload":[95],"pathologists,":[97],"enhance":[99],"objectivity":[101],"efficiency.":[103],"After":[104],"reviewing":[105],"literature,":[108],"it":[109],"exceedingly":[111],"rare":[112],"find":[114],"methods":[115],"or":[116,225],"datasets":[117],"relating":[118],"very":[121],"important":[122],"test":[125],"compared":[126],"other":[128],"tests":[130],"such":[131],"as":[132],"Breast":[133],"cancer,":[134],"Lymphoma":[135],"Colorectal":[137],"cancer.":[138],"This":[139,150],"data":[140,171],"scarcity":[141],"has":[142],"likely":[143],"hindered":[144],"research":[145],"automation.":[149],"paper":[151],"aims":[152],"use":[154],"learning":[156],"classify":[158],"positive":[160],"cocci":[161],"bacteria":[162,191,238],"subtypes,":[163],"study":[166],"effect":[168],"downsampling,":[170],"augmentation,":[172],"size":[175],"classification":[178,242],"accuracy":[179],"speed.":[181],"Experiments":[182],"were":[183],"conducted":[184],"novel":[187],"dataset":[188],"three":[190],"subtypes":[192,239],"provided":[193],"Sullivan":[195],"Nicolaides":[196],"(SNP)":[198],"comprising:":[199],"Staphylococcus,":[200],"Enterococcus":[201],"Streptococcus.":[203],"subimages":[205],"are":[206],"obtained":[207],"from":[208],"blood":[209],"culture":[210],"captured":[212],"in-house":[215],"SNP":[216],"MicroLab":[217],"using":[218],"63":[221],"objective":[222],"without":[223],"coverslips":[224],"immersion.":[227],"Our":[228],"results":[229],"show":[230],"that":[231],"DNN-based":[233],"classifier":[234],"distinguishes":[235],"between":[236],"these":[237],"accuracy.":[243]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
