{"id":"https://openalex.org/W4239016173","doi":"https://doi.org/10.1109/dexa.2004.1333504","title":"BioMap: gene family based integration of heterogeneous biological databases using AutoMed metadata","display_name":"BioMap: gene family based integration of heterogeneous biological databases using AutoMed metadata","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W4239016173","doi":"https://doi.org/10.1109/dexa.2004.1333504"},"language":"en","primary_location":{"id":"doi:10.1109/dexa.2004.1333504","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2004.1333504","pdf_url":null,"source":{"id":"https://openalex.org/S4363608686","display_name":"Proceedings. 15th International Workshop on Database and Expert Systems Applications, 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 15th International Workshop on Database and Expert Systems Applications, 2004.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007832997","display_name":"M. Maibaum","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I98259816","display_name":"Birkbeck, University of London","ror":"https://ror.org/02mb95055","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I98259816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. Maibaum","raw_affiliation_strings":["Department of Biochemistry, University College London, UK","School of Computer Science and Information Systems, Birkbeck College, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University College London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"School of Computer Science and Information Systems, Birkbeck College, London, UK","institution_ids":["https://openalex.org/I98259816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012725230","display_name":"G. Rimon","orcid":null},"institutions":[{"id":"https://openalex.org/I98259816","display_name":"Birkbeck, University of London","ror":"https://ror.org/02mb95055","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I98259816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G. Rimon","raw_affiliation_strings":["School of Computer Science and Information Systems, Birkbeck College, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Systems, Birkbeck College, London, UK","institution_ids":["https://openalex.org/I98259816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038946300","display_name":"C. Orengo","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"C. Orengo","raw_affiliation_strings":["Department of Biochemistry, University College London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University College London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078897753","display_name":"N. Martin","orcid":null},"institutions":[{"id":"https://openalex.org/I98259816","display_name":"Birkbeck, University of London","ror":"https://ror.org/02mb95055","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I98259816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"N. Martin","raw_affiliation_strings":["School of Computer Science and Information Systems, Birkbeck College, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Systems, Birkbeck College, London, UK","institution_ids":["https://openalex.org/I98259816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069566657","display_name":"A. Poulovassilis","orcid":null},"institutions":[{"id":"https://openalex.org/I98259816","display_name":"Birkbeck, University of London","ror":"https://ror.org/02mb95055","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I98259816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. Poulovassilis","raw_affiliation_strings":["School of Computer Science and Information Systems, Birkbeck College, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Systems, Birkbeck College, London, UK","institution_ids":["https://openalex.org/I98259816"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7365,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.80921895,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"384","last_page":"388"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7921147346496582},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.7395570874214172},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6857540607452393},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.5764108896255493},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5668944716453552},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.561002254486084},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41646844148635864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34250324964523315},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3390088677406311},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1386452615261078}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7921147346496582},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.7395570874214172},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6857540607452393},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.5764108896255493},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5668944716453552},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.561002254486084},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41646844148635864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34250324964523315},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3390088677406311},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1386452615261078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/dexa.2004.1333504","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2004.1333504","pdf_url":null,"source":{"id":"https://openalex.org/S4363608686","display_name":"Proceedings. 15th International Workshop on Database and Expert Systems Applications, 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 15th International Workshop on Database and Expert Systems Applications, 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1983385867","https://openalex.org/W1984865036","https://openalex.org/W2101732327","https://openalex.org/W2108067237","https://openalex.org/W2124166542","https://openalex.org/W2165739018"],"related_works":["https://openalex.org/W2307569040","https://openalex.org/W2131941936","https://openalex.org/W2541393756","https://openalex.org/W2060096282","https://openalex.org/W2385643360","https://openalex.org/W2739872940","https://openalex.org/W115596161","https://openalex.org/W1983206747","https://openalex.org/W2167730203","https://openalex.org/W1537750021"],"abstract_inverted_index":{"This":[0,109],"work":[1],"presents":[2],"an":[3],"extensible":[4],"architecture":[5,46],"that":[6],"can":[7],"be":[8],"used":[9],"to":[10,42,53],"support":[11],"the":[12,27,48,55,62,77,86,92,102,111,120,126],"integration":[13,51],"of":[14,24,57,80,94,122,128],"biological":[15,32],"data":[16,28,33,50,58,88,130],"sets.":[17],"Biological":[18],"research":[19],"frequently":[20],"requires":[21],"this":[22],"kind":[23],"synthesis.":[25],"However,":[26],"models":[29],"on":[30,116],"which":[31,84],"sets":[34],"have":[35],"been":[36],"constructed":[37],"are":[38,105],"heterogeneous":[39],"and":[40,91,131],"difficult":[41],"use":[43,121],"together.":[44],"Our":[45],"uses":[47],"AutoMed":[49],"toolkit":[52],"store":[54],"schemas":[56,66],"sources,":[59],"together":[60],"with":[61],"transformation":[63,73],"from":[64],"these":[65],"into":[67,113],"a":[68,81],"global":[69,82],"integrated":[70,106],"schema.":[71],"The":[72],"encompasses":[74],"two":[75],"parts;":[76],"incremental":[78],"construction":[79],"schema":[83],"unifies":[85],"various":[87],"source":[89],"schemas,":[90],"identification":[93],"semantically":[95],"identical":[96],"labels":[97],"for":[98],"entities.":[99],"Entities":[100],"in":[101,125],"unified":[103],"resource":[104],"using":[107],"PFS-cape.":[108],"categorises":[110],"entities":[112],"clusters":[114],"based":[115],"sequence":[117],"similarity,":[118],"allowing":[119],"family":[123],"information":[124],"annotation":[127],"expression":[129],"experimental":[132],"target":[133],"selection.":[134]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
