{"id":"https://openalex.org/W2144444308","doi":"https://doi.org/10.1109/dexa.2003.1231995","title":"Having a BLAST: analyzing gene sequence data with BlastQuest","display_name":"Having a BLAST: analyzing gene sequence data with BlastQuest","publication_year":2004,"publication_date":"2004-01-24","ids":{"openalex":"https://openalex.org/W2144444308","doi":"https://doi.org/10.1109/dexa.2003.1231995","mag":"2144444308"},"language":"en","primary_location":{"id":"doi:10.1109/dexa.2003.1231995","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2003.1231995","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"14th International Workshop on Database and Expert Systems Applications, 2003. Proceedings.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084450417","display_name":"William G. Farmerie","orcid":"https://orcid.org/0000-0002-1627-8774"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W.G. Farmerie","raw_affiliation_strings":["ICBR Molecular Services Division: DNA Sequencing Core, Interdisciplinary Center for Biotechnology Research, USA","Florida Univ., Gainesville, FL (USA)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICBR Molecular Services Division: DNA Sequencing Core, Interdisciplinary Center for Biotechnology Research, USA","institution_ids":[]},{"raw_affiliation_string":"Florida Univ., Gainesville, FL (USA)","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108505150","display_name":"J. Hammer","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Hammer","raw_affiliation_strings":["Department of Computer & Information Science & Engineering, University of Florida, Gainesville, FL, USA","[University of Florida]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer & Information Science & Engineering, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103286564","display_name":"Li Liu","orcid":"https://orcid.org/0000-0001-6977-1004"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Li Liu","raw_affiliation_strings":["DNA Sequencing Core, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA","[University of Florida]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DNA Sequencing Core, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051287989","display_name":"Michael Schneider","orcid":"https://orcid.org/0000-0001-9645-1938"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Schneider","raw_affiliation_strings":["Department of Computer & Information Science & Engineering, University of Florida, Gainesville, FL, USA","[University of Florida]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer & Information Science & Engineering, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"[University of Florida]","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":null,"apc_paid":null,"fwci":0.7365,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.78211694,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"37","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7973957061767578},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6149494051933289},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5608721375465393},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5394630432128906},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.4941580593585968},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4669035077095032},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.43940553069114685},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.41939109563827515},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3506914973258972},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3387244939804077},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.11530914902687073},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08632656931877136},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07332292199134827}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7973957061767578},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6149494051933289},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5608721375465393},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5394630432128906},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.4941580593585968},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4669035077095032},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.43940553069114685},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.41939109563827515},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3506914973258972},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3387244939804077},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.11530914902687073},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08632656931877136},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07332292199134827},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/dexa.2003.1231995","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2003.1231995","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"14th International Workshop on Database and Expert Systems Applications, 2003. Proceedings.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.134.6246","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.134.6246","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cise.ufl.edu/~mschneid/Research/papers/FHLS03BIDM.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.76.4233","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.76.4233","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cise.ufl.edu/~jhammer/publications/BIDM2003/hammerj_BlastQuest.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2055043387","https://openalex.org/W2102424043","https://openalex.org/W2142241896","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2770234245","https://openalex.org/W96612179","https://openalex.org/W4229499248","https://openalex.org/W2566006169","https://openalex.org/W1567818861","https://openalex.org/W2987774938","https://openalex.org/W4256492088","https://openalex.org/W632915154","https://openalex.org/W1649706580","https://openalex.org/W3195608031"],"abstract_inverted_index":{"An":[0],"essential":[1],"problem":[2],"for":[3],"biologists":[4],"is":[5,38],"the":[6,15,45,85,90,95],"processing":[7],"and":[8,20,33,51,73,81],"evaluation":[9],"of":[10,17,62],"BLAST":[11,42,46,78],"results.":[12,87],"We":[13],"advocate":[14],"deployment":[16],"database":[18,57],"technology":[19],"describe":[21],"a":[22,55,60,98],"user-driven":[23],"tool,":[24],"called":[25],"BlastQuest.":[26],"BlastQuest":[27,96],"provides":[28],"interactive,":[29],"Web-enabled":[30],"query,":[31],"analysis,":[32],"visualization":[34],"facilities":[35],"beyond":[36],"what":[37],"possible":[39],"by":[40],"current":[41],"interfaces.":[43],"Specifically,":[44],"results":[47,79],"are":[48],"extracted,":[49],"structured,":[50],"stored":[52],"persistently":[53],"in":[54],"relational":[56],"to":[58,70,84,92],"support":[59],"series":[61],"build-in":[63],"analysis":[64],"operations":[65],"that":[66],"can":[67],"be":[68],"used":[69],"select,":[71],"filter,":[72],"order":[74],"data":[75],"from":[76],"multiple":[77],"efficiently":[80],"without":[82],"referring":[83],"original":[86],"Users":[88],"have":[89],"option":[91],"interact":[93],"with":[94],"through":[97],"forms-based":[99],"interface.":[100]},"counts_by_year":[{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
