{"id":"https://openalex.org/W2132274614","doi":"https://doi.org/10.1109/dexa.2003.1231991","title":"BioNotes: a system for biosequence annotation","display_name":"BioNotes: a system for biosequence annotation","publication_year":2004,"publication_date":"2004-01-23","ids":{"openalex":"https://openalex.org/W2132274614","doi":"https://doi.org/10.1109/dexa.2003.1231991","mag":"2132274614"},"language":"en","primary_location":{"id":"doi:10.1109/dexa.2003.1231991","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2003.1231991","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"14th International Workshop on Database and Expert Systems Applications, 2003. Proceedings.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056711912","display_name":"Marcelo J.S. de Lemos","orcid":"https://orcid.org/0000-0001-8810-1938"},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M. Lemos","raw_affiliation_strings":["Departamento de Inform\u00e1tica, Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro, Rio de Janeiro, Brazil","Departamento de Informatica, Pontificia Univ. Catolica do Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica, Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]},{"raw_affiliation_string":"Departamento de Informatica, Pontificia Univ. Catolica do Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058818363","display_name":"Luiz Fernando Bessa Seibel","orcid":null},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"L.F.B. Seibel","raw_affiliation_strings":["Departamento de Inform\u00e1tica, Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro, Rio de Janeiro, Brazil","Departamento de Informatica, Pontificia Univ. Catolica do Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica, Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]},{"raw_affiliation_string":"Departamento de Informatica, Pontificia Univ. Catolica do Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077506036","display_name":"Marco A. Casanova","orcid":"https://orcid.org/0000-0003-0765-9636"},"institutions":[{"id":"https://openalex.org/I2699952","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro","ror":"https://ror.org/01dg47b60","country_code":"BR","type":"education","lineage":["https://openalex.org/I2699952"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M.A. Casanova","raw_affiliation_strings":["Departamento de Inform\u00e1tica, Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro, Rio de Janeiro, Brazil","Departamento de Informatica, Pontificia Univ. Catolica do Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica, Pontif\u00edcia Universidade Cat\u00f3lica do Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]},{"raw_affiliation_string":"Departamento de Informatica, Pontificia Univ. Catolica do Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I2699952"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1206,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.49867468,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"16","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8393023014068604},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8362071514129639},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45804092288017273},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35128718614578247},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2315969169139862}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8393023014068604},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8362071514129639},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45804092288017273},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35128718614578247},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2315969169139862}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/dexa.2003.1231991","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2003.1231991","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"14th International Workshop on Database and Expert Systems Applications, 2003. Proceedings.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320323917","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1512500307","https://openalex.org/W1967618835","https://openalex.org/W2005509307","https://openalex.org/W2055043387","https://openalex.org/W2057099031","https://openalex.org/W2075167696","https://openalex.org/W2088739386","https://openalex.org/W2108401170","https://openalex.org/W2112012991","https://openalex.org/W2112118427","https://openalex.org/W2117858546","https://openalex.org/W2119923823","https://openalex.org/W2121016876","https://openalex.org/W2133253129","https://openalex.org/W2141148930","https://openalex.org/W2143173841","https://openalex.org/W2148853951","https://openalex.org/W2149429041","https://openalex.org/W2150486269","https://openalex.org/W2158304452","https://openalex.org/W2164075646","https://openalex.org/W2166265186","https://openalex.org/W2170488656","https://openalex.org/W2474698170","https://openalex.org/W4236236547","https://openalex.org/W4246395620","https://openalex.org/W4250052351"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W2251519152"],"abstract_inverted_index":{"One":[0],"of":[1,6,12,51,60],"the":[2,10,22,38,52,75,80],"most":[3],"important":[4],"tasks":[5],"genome":[7],"projects":[8],"is":[9],"implementation":[11],"experimental":[13],"data":[14,32],"in":[15,82],"order":[16],"to":[17,47,79],"derive":[18],"biological":[19],"knowledge":[20],"from":[21],"data.":[23,53],"To":[24],"achieve":[25],"this":[26,83],"goal,":[27],"researchers":[28,81],"typically":[29],"search":[30],"external":[31],"sources,":[33],"execute":[34],"analysis":[35],"programs":[36],"on":[37],"biosequences,":[39],"analyze":[40],"previous":[41],"annotations":[42,46],"and":[43],"add":[44],"new":[45],"register":[48],"their":[49],"interpretation":[50],"This":[54],"paper":[55],"elicits":[56],"three":[57],"functional":[58],"requirements":[59],"biosequence":[61],"annotation":[62],"system.":[63],"Then,":[64],"it":[65,77],"describes":[66],"BioNotes,":[67],"a":[68],"tool":[69],"that":[70],"meets":[71],"these":[72],"requirements,":[73],"stressing":[74],"advantages":[76],"brings":[78],"area.":[84]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}