{"id":"https://openalex.org/W2144453646","doi":"https://doi.org/10.1109/dasfaa.2003.1192396","title":"An efficient index-based protein structure database searching method","display_name":"An efficient index-based protein structure database searching method","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2144453646","doi":"https://doi.org/10.1109/dasfaa.2003.1192396","mag":"2144453646"},"language":"en","primary_location":{"id":"doi:10.1109/dasfaa.2003.1192396","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dasfaa.2003.1192396","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eighth International Conference on Database Systems for Advanced Applications, 2003. (DASFAA 2003). Proceedings.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005863795","display_name":"Zeyar Aung","orcid":"https://orcid.org/0000-0001-5990-9305"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Zeyar Aung","raw_affiliation_strings":["Department Computer Science, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department Computer Science, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069423222","display_name":"Wei Fu","orcid":"https://orcid.org/0000-0001-5018-1960"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wei Fu","raw_affiliation_strings":["Department Computer Science, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department Computer Science, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077593594","display_name":"Kian\u2010Lee Tan","orcid":"https://orcid.org/0000-0001-9315-4057"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kian-Lee Tan","raw_affiliation_strings":["Department Computer Science, National University of Singapore, Singapore","Genome Institute of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department Computer Science, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Genome Institute of Singapore, Singapore","institution_ids":["https://openalex.org/I66068411"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005863795"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":null,"apc_paid":null,"fwci":5.1476,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.95507045,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"311","last_page":"318"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11106","display_name":"Data Management and Algorithms","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8349170088768005},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.833279550075531},{"id":"https://openalex.org/keywords/database-index","display_name":"Database index","score":0.7452895641326904},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.6890839338302612},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6112197041511536},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5810876488685608},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5639504790306091},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.4899806082248688},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.46715015172958374},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4268672466278076},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.13031426072120667},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.06541213393211365}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8349170088768005},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.833279550075531},{"id":"https://openalex.org/C59276292","wikidata":"https://www.wikidata.org/wiki/Q580427","display_name":"Database index","level":3,"score":0.7452895641326904},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.6890839338302612},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6112197041511536},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5810876488685608},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5639504790306091},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.4899806082248688},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.46715015172958374},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4268672466278076},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.13031426072120667},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.06541213393211365},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/dasfaa.2003.1192396","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dasfaa.2003.1192396","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eighth International Conference on Database Systems for Advanced Applications, 2003. (DASFAA 2003). Proceedings.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.160.6010","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.160.6010","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www1.i2r.a-star.edu.sg/~azeyar/PDF/ProtDex_IEEE.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W42190837","https://openalex.org/W1510161841","https://openalex.org/W1520321564","https://openalex.org/W1536436455","https://openalex.org/W1876353827","https://openalex.org/W1965910641","https://openalex.org/W1966521833","https://openalex.org/W2008708467","https://openalex.org/W2022058405","https://openalex.org/W2023790301","https://openalex.org/W2030428223","https://openalex.org/W2053281575","https://openalex.org/W2110397834","https://openalex.org/W2113563422","https://openalex.org/W2117077088","https://openalex.org/W2130479394","https://openalex.org/W2146691282","https://openalex.org/W2152326664","https://openalex.org/W2156019551","https://openalex.org/W4244734826","https://openalex.org/W6601694875","https://openalex.org/W6631239882","https://openalex.org/W6632109634"],"related_works":["https://openalex.org/W1505866794","https://openalex.org/W2527247821","https://openalex.org/W1562055306","https://openalex.org/W4237510188","https://openalex.org/W2048379072","https://openalex.org/W4301000806","https://openalex.org/W2059878404","https://openalex.org/W2185250746","https://openalex.org/W2151419829","https://openalex.org/W2127393182"],"abstract_inverted_index":{"In":[0,20],"this":[1],"paper,":[2],"we":[3,22,47,57],"present":[4],"a":[5,39,50],"novel":[6],"indexing":[7],"method":[8,98],"called":[9],"ProtDex":[10],"to":[11,67,90,114,127],"facilitate":[12],"fast":[13],"searching":[14,101],"in":[15,34],"3-dimensional":[16],"protein":[17],"structure":[18],"database.":[19,36],"ProtDex,":[21],"first":[23],"build":[24],"an":[25],"index":[26],"on":[27,76],"the":[28,35,42,45,68,72,95,128],"representative":[29],"properties":[30],"of":[31,44,54,116],"all":[32],"proteins":[33],"When":[37],"evaluating":[38],"query,":[40],"with":[41,63],"help":[43],"index,":[46],"filter":[48],"out":[49],"small":[51],"candidate":[52],"list":[53],"proteins.":[55],"Then,":[56],"can":[58],"either":[59],"directly":[60],"report":[61],"them,":[62],"their":[64],"respective":[65],"rankings,":[66],"user,":[69],"or":[70],"do":[71],"expensive":[73],"actual":[74,104],"alignments":[75],"them":[77],"upon":[78,122],"user's":[79],"request.":[80],"Preliminary":[81],"experimental":[82],"results":[83],"show":[84],"that":[85,115],"our":[86],"solution":[87],"is":[88,110,120],"up":[89],"16":[91],"times":[92],"faster":[93],"than":[94],"popular":[96],"DALI":[97],"for":[99],"database":[100],"task":[102],"(without":[103],"alignments),":[105],"while":[106],"its":[107],"overall":[108],"accuracy":[109],"only":[111],"slightly":[112],"inferior":[113],"DALI.":[117],"The":[118],"software":[119],"available":[121],"request":[123],"by":[124],"sending":[125],"emails":[126],"authors.":[129]},"counts_by_year":[{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
