{"id":"https://openalex.org/W3211961913","doi":"https://doi.org/10.1109/dac18074.2021.9586144","title":"PIM-Quantifier: A Processing-in-Memory Platform for mRNA Quantification","display_name":"PIM-Quantifier: A Processing-in-Memory Platform for mRNA Quantification","publication_year":2021,"publication_date":"2021-11-08","ids":{"openalex":"https://openalex.org/W3211961913","doi":"https://doi.org/10.1109/dac18074.2021.9586144","mag":"3211961913"},"language":"en","primary_location":{"id":"doi:10.1109/dac18074.2021.9586144","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dac18074.2021.9586144","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 58th ACM/IEEE Design Automation Conference (DAC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074715434","display_name":"Fan Zhang","orcid":"https://orcid.org/0000-0002-6823-2700"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":["School of Electrical, Computer and energy Engineering, Arizona State University, Tempe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical, Computer and energy Engineering, Arizona State University, Tempe, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051680668","display_name":"Shaahin Angizi","orcid":"https://orcid.org/0000-0003-2289-6381"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaahin Angizi","raw_affiliation_strings":["School of Electrical, Computer and energy Engineering, Arizona State University, Tempe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical, Computer and energy Engineering, Arizona State University, Tempe, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071466514","display_name":"Naima Ahmed Fahmi","orcid":"https://orcid.org/0000-0003-2745-2130"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naima Ahmed Fahmi","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047634459","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0001-8134-6908"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047916979","display_name":"Deliang Fan","orcid":"https://orcid.org/0000-0002-7989-6297"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deliang Fan","raw_affiliation_strings":["School of Electrical, Computer and energy Engineering, Arizona State University, Tempe, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical, Computer and energy Engineering, Arizona State University, Tempe, USA","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9153,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.74592612,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"43","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12808","display_name":"Ferroelectric and Negative Capacitance Devices","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7098479270935059},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.44904625415802},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.4419832229614258},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4275057315826416},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3817159831523895},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3423565626144409},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.337238073348999},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.15869972109794617},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10655292868614197},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09816285967826843}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7098479270935059},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.44904625415802},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.4419832229614258},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4275057315826416},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3817159831523895},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3423565626144409},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.337238073348999},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.15869972109794617},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10655292868614197},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09816285967826843},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/dac18074.2021.9586144","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dac18074.2021.9586144","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 58th ACM/IEEE Design Automation Conference (DAC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2006232962","https://openalex.org/W2010202670","https://openalex.org/W2113809410","https://openalex.org/W2125693020","https://openalex.org/W2130195589","https://openalex.org/W2140729960","https://openalex.org/W2141458291","https://openalex.org/W2148256155","https://openalex.org/W2214682759","https://openalex.org/W2323326409","https://openalex.org/W2328430807","https://openalex.org/W2396622873","https://openalex.org/W2399958287","https://openalex.org/W2536491920","https://openalex.org/W2539383463","https://openalex.org/W2592811885","https://openalex.org/W2793867693","https://openalex.org/W2870561134","https://openalex.org/W2946017187","https://openalex.org/W2996911084","https://openalex.org/W3016287095","https://openalex.org/W3091803956","https://openalex.org/W3105284836","https://openalex.org/W4255133361","https://openalex.org/W6652940909","https://openalex.org/W6678896997"],"related_works":["https://openalex.org/W2136583354","https://openalex.org/W2111238207","https://openalex.org/W2760721665","https://openalex.org/W330130819","https://openalex.org/W2288610023","https://openalex.org/W2112044895","https://openalex.org/W2898732673","https://openalex.org/W3121416282","https://openalex.org/W2281389338","https://openalex.org/W2037453743"],"abstract_inverted_index":{"Processing-in-memory":[0],"(PIM)":[1],"architecture":[2],"has":[3,43],"been":[4,45],"considered":[5],"as":[6,130],"a":[7,53,75],"promising":[8],"solution":[9],"for":[10,26,56,69,82],"the":[11,70,97],"\u201cmemory-wall\u201d":[12],"issue":[13],"in":[14,19,127],"many":[15],"data-intensive":[16],"applications,":[17],"especially":[18],"bioinformatics.":[20],"Recent":[21],"works":[22],"of":[23],"developing":[24],"PIM":[25,78,99,125],"genome":[27,38],"alignment":[28],"and":[29,48,63,102,122],"assembling":[30],"have":[31],"achieved":[32],"tremendous":[33],"improvement,":[34],"while":[35],"another":[36],"important":[37],"analysis":[39],"-":[40],"mRNA":[41,50,84,108,117],"quantification":[42,51,89,118],"not":[44],"explored.":[46],"Efficient":[47],"accurate":[49],"is":[52,91],"crucial":[54],"step":[55],"molecular":[57],"signature":[58],"identification,":[59],"disease":[60],"outcome":[61],"prediction":[62],"drug":[64],"development.":[65],"In":[66],"this":[67],"paper,":[68],"first":[71,92],"time,":[72],"we":[73,95],"propose":[74],"SOT-MRAM":[76],"based":[77],"platform,":[79],"named":[80],"PIM-Quantifier,":[81],"efficient":[83],"quantification.":[85,109],"A":[86],"PIM-friendly":[87],"alignment-free":[88],"algorithm":[90],"proposed.":[93],"Then,":[94],"present":[96],"optimized":[98],"architecture/circuit":[100],"designs":[101],"mapping":[103],"method":[104],"to":[105],"efficiently":[106],"accelerate":[107],"Extensive":[110],"experiments":[111],"show":[112],"that":[113],"PIM-Quantifier":[114],"significantly":[115],"improves":[116],"performance":[119],"than":[120],"CPU":[121],"recent":[123],"other":[124],"platforms":[126],"efficiency":[128],"defined":[129],"throughput/power.":[131]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}