{"id":"https://openalex.org/W1522233644","doi":"https://doi.org/10.1109/cybconf.2015.7175964","title":"Similarity analysis based on sparse representation for protein sequence comparison","display_name":"Similarity analysis based on sparse representation for protein sequence comparison","publication_year":2015,"publication_date":"2015-06-01","ids":{"openalex":"https://openalex.org/W1522233644","doi":"https://doi.org/10.1109/cybconf.2015.7175964","mag":"1522233644"},"language":"en","primary_location":{"id":"doi:10.1109/cybconf.2015.7175964","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cybconf.2015.7175964","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 2nd International Conference on Cybernetics (CYBCONF)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008154497","display_name":"Lina Yang","orcid":"https://orcid.org/0000-0003-3489-1887"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]},{"id":"https://openalex.org/I4210118063","display_name":"Guangxi Normal University for Nationalities","ror":"https://ror.org/02cejc171","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210118063"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Lina Yang","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China","Guangxi Normal University for Nationalities, Chongzuo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Guangxi Normal University for Nationalities, Chongzuo, China","institution_ids":["https://openalex.org/I4210118063"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085140523","display_name":"Yuan Yan Tang","orcid":"https://orcid.org/0000-0002-6887-130X"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Yuan Yan Tang","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100449209","display_name":"Yulong Wang","orcid":"https://orcid.org/0000-0002-8373-8400"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Yulong Wang","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101498949","display_name":"Huiwu Luo","orcid":"https://orcid.org/0000-0002-5908-5518"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Huiwu Luo","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103101981","display_name":"Jianjia Pan","orcid":"https://orcid.org/0000-0003-2561-3156"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Jianjia Pan","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016933731","display_name":"Haoliang Yuan","orcid":"https://orcid.org/0000-0001-5167-226X"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Haoliang Yuan","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063225294","display_name":"Xianwei Zheng","orcid":"https://orcid.org/0000-0001-9783-3030"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Xianwei Zheng","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100669915","display_name":"Chunli Li","orcid":"https://orcid.org/0000-0001-7095-5820"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Chunli Li","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009010907","display_name":"Ting Shu","orcid":"https://orcid.org/0000-0003-0566-2890"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Ting Shu","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau, Macau, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau, Macau, China","institution_ids":["https://openalex.org/I204512498"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.3538,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.8655636,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"382","last_page":"387"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7193253040313721},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6312685012817383},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.60341477394104},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.5685129165649414},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5283862948417664},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5262326598167419},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5202316641807556},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4588288962841034},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4519878327846527},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.4497041404247284},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43406394124031067},{"id":"https://openalex.org/keywords/sparse-approximation","display_name":"Sparse approximation","score":0.4195513427257538},{"id":"https://openalex.org/keywords/matrix-representation","display_name":"Matrix representation","score":0.41789400577545166},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3668360114097595},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.36643320322036743},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34310680627822876},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.2816390097141266},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1659245491027832},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.16068372130393982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14633247256278992},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1041451096534729},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08002594113349915}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7193253040313721},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6312685012817383},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.60341477394104},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.5685129165649414},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5283862948417664},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5262326598167419},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5202316641807556},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4588288962841034},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4519878327846527},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.4497041404247284},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43406394124031067},{"id":"https://openalex.org/C124066611","wikidata":"https://www.wikidata.org/wiki/Q28684319","display_name":"Sparse approximation","level":2,"score":0.4195513427257538},{"id":"https://openalex.org/C103275481","wikidata":"https://www.wikidata.org/wiki/Q6787889","display_name":"Matrix representation","level":3,"score":0.41789400577545166},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3668360114097595},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.36643320322036743},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34310680627822876},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.2816390097141266},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1659245491027832},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.16068372130393982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14633247256278992},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1041451096534729},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08002594113349915},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C2781311116","wikidata":"https://www.wikidata.org/wiki/Q83306","display_name":"Group (periodic table)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cybconf.2015.7175964","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cybconf.2015.7175964","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 2nd International Conference on Cybernetics (CYBCONF)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1490329454","https://openalex.org/W1975304761","https://openalex.org/W2022053762","https://openalex.org/W2050834445","https://openalex.org/W2053821953","https://openalex.org/W2073936830","https://openalex.org/W2111579412","https://openalex.org/W2113606819","https://openalex.org/W2124542342","https://openalex.org/W2127271355","https://openalex.org/W2128659236","https://openalex.org/W2137255850","https://openalex.org/W2140245639","https://openalex.org/W2151693816","https://openalex.org/W2216040507","https://openalex.org/W2296616510","https://openalex.org/W2739616593","https://openalex.org/W2744430265","https://openalex.org/W3099514962","https://openalex.org/W4250955649","https://openalex.org/W4299295216","https://openalex.org/W6676891323"],"related_works":["https://openalex.org/W2159663778","https://openalex.org/W2936543792","https://openalex.org/W2981223346","https://openalex.org/W2056092504","https://openalex.org/W4236358448","https://openalex.org/W2318097870","https://openalex.org/W2065993463","https://openalex.org/W2181899571","https://openalex.org/W1568877569","https://openalex.org/W2949348468"],"abstract_inverted_index":{"This":[0],"paper":[1],"propose":[2],"a":[3],"least":[4,52],"square-based":[5],"sparse":[6],"representation":[7],"algorithm":[8],"to":[9,55],"analyze":[10],"similarity":[11,62],"comparison":[12],"of":[13,19,30],"protein":[14,31,36,89],"sequences":[15,37],"in":[16],"the":[17,26,41,51,57,61,64,72,83,97,104],"area":[18],"bioinformatics":[20],"and":[21,28,33],"molecular":[22],"biology,":[23],"which":[24],"helps":[25],"prediction":[27],"classification":[29],"structure":[32],"function.":[34],"The":[35,92],"are":[38],"represented":[39],"into":[40],"1-dimensional":[42],"feature":[43,58],"vectors":[44],"by":[45,70,81],"their":[46],"biochemical":[47],"quantities.":[48],"Then":[49],"using":[50],"square":[53],"method":[54],"form":[56],"vector.":[59],"Through":[60],"calculation,":[63],"distance":[65],"matrix":[66],"can":[67,75],"be":[68,76],"obtained,":[69],"which,":[71],"phylogenic":[73],"tree":[74],"constructed.We":[77],"apply":[78],"this":[79],"approach":[80],"analyzing":[82],"ND5":[84],"(NADH":[85],"dehydrogenase":[86],"subunit":[87],"5)":[88],"cluster":[90],"dataset.":[91],"experimental":[93],"results":[94],"show":[95],"that":[96],"proposed":[98],"model":[99],"is":[100,108],"more":[101],"accurate":[102],"than":[103],"Su's":[105],"model,and":[106],"it":[107],"closer":[109],"with":[110],"some":[111],"known":[112],"biological":[113],"facts.":[114]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
