{"id":"https://openalex.org/W2976035493","doi":"https://doi.org/10.1109/cvprw50498.2020.00501","title":"A Topological Nomenclature for 3D Shape Analysis in Connectomics","display_name":"A Topological Nomenclature for 3D Shape Analysis in Connectomics","publication_year":2020,"publication_date":"2020-06-01","ids":{"openalex":"https://openalex.org/W2976035493","doi":"https://doi.org/10.1109/cvprw50498.2020.00501","mag":"2976035493"},"language":"en","primary_location":{"id":"doi:10.1109/cvprw50498.2020.00501","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cvprw50498.2020.00501","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1909.12887","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030343110","display_name":"Abhimanyu Talwar","orcid":null},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abhimanyu Talwar","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016580378","display_name":"Zudi Lin","orcid":"https://orcid.org/0000-0003-4176-8035"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zudi Lin","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085365474","display_name":"Donglai Wei","orcid":"https://orcid.org/0000-0002-2329-5484"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donglai Wei","raw_affiliation_strings":["Harvard University","Harvard University ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]},{"raw_affiliation_string":"Harvard University ,","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020647989","display_name":"Yuesong Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuesong Wu","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023828194","display_name":"Bowen Zheng","orcid":"https://orcid.org/0000-0002-7252-962X"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bowen Zheng","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053626069","display_name":"Jinglin Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinglin Zhao","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038566732","display_name":"Won-Dong Jang","orcid":"https://orcid.org/0000-0002-5205-1024"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Won-Dong Jang","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100425327","display_name":"Xueying Wang","orcid":"https://orcid.org/0000-0001-9291-793X"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xueying Wang","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037495122","display_name":"Jeff W. Lichtman","orcid":"https://orcid.org/0000-0002-0208-3212"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeff Lichtman","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043151044","display_name":"Hanspeter Pfister","orcid":"https://orcid.org/0000-0002-3620-2582"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanspeter Pfister","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I2801851002"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"1669","issue":null,"first_page":"4245","last_page":"4253"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/connectomics","display_name":"Connectomics","score":0.9188170433044434},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6440464854240417},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.5230870246887207},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.48474618792533875},{"id":"https://openalex.org/keywords/tardigrada","display_name":"Tardigrada","score":0.4361182153224945},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4201325476169586},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4137133061885834},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3957465887069702},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3354954123497009},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3240041136741638},{"id":"https://openalex.org/keywords/connectome","display_name":"Connectome","score":0.2526283264160156},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23507443070411682},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.2329552173614502},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12647411227226257}],"concepts":[{"id":"https://openalex.org/C2779097318","wikidata":"https://www.wikidata.org/wiki/Q2993446","display_name":"Connectomics","level":4,"score":0.9188170433044434},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6440464854240417},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.5230870246887207},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.48474618792533875},{"id":"https://openalex.org/C2909458119","wikidata":"https://www.wikidata.org/wiki/Q5194","display_name":"Tardigrada","level":2,"score":0.4361182153224945},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4201325476169586},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4137133061885834},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3957465887069702},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3354954123497009},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3240041136741638},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.2526283264160156},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23507443070411682},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.2329552173614502},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12647411227226257},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.0},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/cvprw50498.2020.00501","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cvprw50498.2020.00501","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1909.12887","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1909.12887","pdf_url":"https://arxiv.org/pdf/1909.12887","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.1909.12887","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1909.12887","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"mag:2976035493","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1909.12887","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1909.12887","pdf_url":"https://arxiv.org/pdf/1909.12887","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2976035493.pdf","grobid_xml":"https://content.openalex.org/works/W2976035493.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W255569507","https://openalex.org/W568917201","https://openalex.org/W1513082520","https://openalex.org/W1901129140","https://openalex.org/W1959608418","https://openalex.org/W2087563523","https://openalex.org/W2087655721","https://openalex.org/W2100657858","https://openalex.org/W2157575450","https://openalex.org/W2165874743","https://openalex.org/W2344597831","https://openalex.org/W2752885492","https://openalex.org/W2760861884","https://openalex.org/W2761733590","https://openalex.org/W2792634584","https://openalex.org/W2894822713","https://openalex.org/W2949808130","https://openalex.org/W3204525513","https://openalex.org/W6639824700","https://openalex.org/W6640963894","https://openalex.org/W6684578312","https://openalex.org/W6730084236"],"related_works":["https://openalex.org/W3044603806","https://openalex.org/W2963407974","https://openalex.org/W2085408638","https://openalex.org/W3013946425","https://openalex.org/W2906387670","https://openalex.org/W2989341556","https://openalex.org/W3134327232","https://openalex.org/W2351757444","https://openalex.org/W2995846636","https://openalex.org/W3109558608","https://openalex.org/W3017155020","https://openalex.org/W2916256031","https://openalex.org/W44316965","https://openalex.org/W2218298318","https://openalex.org/W3172633705","https://openalex.org/W2952699330","https://openalex.org/W2951203747","https://openalex.org/W121799441","https://openalex.org/W2377874540","https://openalex.org/W11424266"],"abstract_inverted_index":{"One":[0],"of":[1,11,131,166],"the":[2,8,62,79,83,89,102,108,129,144],"essential":[3],"tasks":[4],"in":[5],"connectomics":[6],"is":[7,188],"morphology":[9],"analysis":[10,70],"neurons":[12,98,170],"and":[13,43,99,105,137,168,183],"organelles":[14],"like":[15,61],"mitochondria":[16,100,167],"to":[17,40,57,67,87],"shed":[18],"light":[19],"on":[20,72],"their":[21,45,73,180],"biological":[22,26],"properties.":[23],"However,":[24],"these":[25,59],"objects":[27,60],"often":[28],"have":[29],"tangled":[30],"parts":[31],"or":[32],"complex":[33],"branching":[34],"patterns,":[35],"which":[36],"make":[37],"it":[38],"hard":[39],"abstract,":[41],"categorize,":[42],"manipulate":[44],"morphology.":[46],"In":[47,114],"this":[48],"paper,":[49],"we":[50,92,117,140,159],"develop":[51,93],"a":[52,162,173],"novel":[53],"topological":[54,146,184],"nomenclature":[55,94,147,185],"system":[56],"name":[58],"appellation":[63],"for":[64,96,111],"chemical":[65],"compounds":[66],"promote":[68],"neuroscience":[69],"based":[71],"skeletal":[74],"structures.":[75],"We":[76],"first":[77],"convert":[78],"volumetric":[80],"representation":[81],"into":[82],"topology-preserving":[84],"reduced":[85,103,181],"graph":[86,104,182],"untangle":[88],"objects.":[90],"Next,":[91],"rules":[95],"pyramidal":[97,169],"from":[101,172],"finally":[106],"learn":[107],"feature":[109],"embedding":[110],"shape":[112,135,154],"manipulation.":[113],"ablation":[115],"studies,":[116],"quantitatively":[118],"show":[119],"that":[120,143],"graphs":[121],"generated":[122],"by":[123],"our":[124],"proposed":[125],"method":[126],"align":[127],"with":[128,179],"perception":[130],"experts.":[132],"On":[133],"3D":[134,163],"retrieval":[136],"decomposition":[138],"tasks,":[139],"qualitatively":[141],"demonstrate":[142],"encoded":[145],"features":[148],"achieve":[149],"better":[150],"results":[151],"than":[152],"state-of-the-art":[153],"descriptors.":[155],"To":[156],"advance":[157],"neuroscience,":[158],"will":[160],"release":[161],"segmentation":[164],"dataset":[165],"reconstructed":[171],"100\u03bcm":[174],"cube":[175],"electron":[176],"microscopy":[177],"volume":[178],"annotations.":[186],"Code":[187],"publicly":[189],"available":[190],"at":[191],"https://github.com/donglaiw/ibexHelper.":[192]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
