{"id":"https://openalex.org/W2008075225","doi":"https://doi.org/10.1109/cvpr.2012.6247778","title":"Learning to segment dense cell nuclei with shape prior","display_name":"Learning to segment dense cell nuclei with shape prior","publication_year":2012,"publication_date":"2012-06-01","ids":{"openalex":"https://openalex.org/W2008075225","doi":"https://doi.org/10.1109/cvpr.2012.6247778","mag":"2008075225"},"language":"en","primary_location":{"id":"doi:10.1109/cvpr.2012.6247778","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cvpr.2012.6247778","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Conference on Computer Vision and Pattern Recognition","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038369604","display_name":"Xinghua Lou","orcid":"https://orcid.org/0009-0005-2384-2897"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Xinghua Lou","raw_affiliation_strings":["HCI, IWR, University of Heidelberg, Germany","HCI, IWR, University of Heidelberg, 69115, Germany"],"affiliations":[{"raw_affiliation_string":"HCI, IWR, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"HCI, IWR, University of Heidelberg, 69115, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010815894","display_name":"Ullrich Koethe","orcid":"https://orcid.org/0000-0001-6036-1287"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"U. Koethe","raw_affiliation_strings":["HCI, IWR, University of Heidelberg, Germany","HCI, IWR, University of Heidelberg, 69115, Germany"],"affiliations":[{"raw_affiliation_string":"HCI, IWR, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"HCI, IWR, University of Heidelberg, 69115, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072696982","display_name":"Joachim Wittbrodt","orcid":"https://orcid.org/0000-0001-8550-7377"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210086570","display_name":"Heidelberg University of Education","ror":"https://ror.org/0044w3h23","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210086570"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J. Wittbrodt","raw_affiliation_strings":["Department of Developmental Biology, University of Heidelberg, Germany","Department of Developmental Biology, University of Heidelberg, 69115, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Developmental Biology, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I4210086570"]},{"raw_affiliation_string":"Department of Developmental Biology, University of Heidelberg, 69115, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020048224","display_name":"Fred A. Hamprecht","orcid":"https://orcid.org/0000-0003-4148-5043"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"F. A. Hamprecht","raw_affiliation_strings":["HCI, IWR, University of Heidelberg, Germany","HCI, IWR, University of Heidelberg, 69115, Germany"],"affiliations":[{"raw_affiliation_string":"HCI, IWR, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"HCI, IWR, University of Heidelberg, 69115, Germany","institution_ids":["https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5038369604"],"corresponding_institution_ids":["https://openalex.org/I223822909"],"apc_list":null,"apc_paid":null,"fwci":7.3447,"has_fulltext":false,"cited_by_count":44,"citation_normalized_percentile":{"value":0.9737395,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1012","last_page":"1018"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.495355486869812},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3842167258262634}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.495355486869812},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3842167258262634}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cvpr.2012.6247778","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cvpr.2012.6247778","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Conference on Computer Vision and Pattern Recognition","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.471.5473","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.471.5473","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hci.iwr.uni-heidelberg.de/publications/mip/techrep/lou_12_learning.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.7900000214576721,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1518641734","https://openalex.org/W1677409904","https://openalex.org/W1890779811","https://openalex.org/W1988977196","https://openalex.org/W1995583822","https://openalex.org/W2010399610","https://openalex.org/W2013525041","https://openalex.org/W2019319323","https://openalex.org/W2031312855","https://openalex.org/W2076927398","https://openalex.org/W2092423930","https://openalex.org/W2098979973","https://openalex.org/W2099610552","https://openalex.org/W2101309634","https://openalex.org/W2104066896","https://openalex.org/W2104311408","https://openalex.org/W2105842272","https://openalex.org/W2106569125","https://openalex.org/W2115364117","https://openalex.org/W2120601853","https://openalex.org/W2123713213","https://openalex.org/W2130513366","https://openalex.org/W2137117160","https://openalex.org/W2137624270","https://openalex.org/W2140286515","https://openalex.org/W2142332605","https://openalex.org/W2143146918","https://openalex.org/W2143516773","https://openalex.org/W2147546750","https://openalex.org/W2162245111","https://openalex.org/W2169527406","https://openalex.org/W2911964244","https://openalex.org/W3023742835","https://openalex.org/W6637400245","https://openalex.org/W6675783020","https://openalex.org/W6677054210","https://openalex.org/W6679459161","https://openalex.org/W7009134754"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"We":[0,68],"study":[1],"the":[2,36,75,126],"problem":[3,21],"of":[4,65],"segmenting":[5],"multiple":[6],"cell":[7,26,55],"nuclei":[8],"from":[9],"GFP":[10],"or":[11,43],"Hoechst":[12],"stained":[13],"microscope":[14],"images":[15],"with":[16,40],"a":[17,71,81,120,131],"shape":[18,83],"prior.":[19,84],"This":[20],"is":[22,33],"encountered":[23],"ubiquitously":[24],"in":[25],"biology":[27],"and":[28,96,119],"developmental":[29],"biology.":[30],"Our":[31],"work":[32],"motivated":[34],"by":[35],"observation":[37],"that":[38,79],"segmentations":[39],"loose":[41],"boundary":[42],"shrinking":[44],"bias":[45],"not":[46],"only":[47],"jeopardize":[48],"feature":[49],"extraction":[50],"for":[51],"downstream":[52],"tasks":[53],"(e.g.":[54,63],"tracking),":[56],"but":[57],"also":[58],"prevent":[59],"robust":[60],"statistical":[61],"analysis":[62],"modeling":[64],"fluorescence":[66],"distribution).":[67],"therefore":[69],"propose":[70],"novel":[72],"extension":[73],"to":[74],"graph":[76],"cut":[77],"framework":[78],"incorporates":[80],"\u201cblob\u201d-like":[82],"The":[85],"corresponding":[86],"energy":[87],"terms":[88],"are":[89],"parameterized":[90],"via":[91],"structured":[92],"learning.":[93],"Extensive":[94],"evaluation":[95],"comparison":[97],"on":[98,130],"2D/3D":[99],"datasets":[100],"show":[101],"substantial":[102],"quantitative":[103],"improvement":[104],"over":[105,125],"other":[106],"state-of-the-art":[107],"methods.":[108],"For":[109],"example,":[110],"our":[111],"method":[112,129],"achieves":[113],"an":[114],"8.2%":[115],"Rand":[116],"index":[117],"increase":[118],"4.3":[121],"Hausdorff":[122],"distance":[123],"decrease":[124],"second":[127],"best":[128],"public":[132],"hand-labeled":[133],"2D":[134],"benchmark.":[135]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":8}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
