{"id":"https://openalex.org/W2163546040","doi":"https://doi.org/10.1109/cvpr.2010.5540065","title":"Rapid and accurate developmental stage recognition of C. elegans from high-throughput image data","display_name":"Rapid and accurate developmental stage recognition of C. elegans from high-throughput image data","publication_year":2010,"publication_date":"2010-06-01","ids":{"openalex":"https://openalex.org/W2163546040","doi":"https://doi.org/10.1109/cvpr.2010.5540065","mag":"2163546040","pmid":"https://pubmed.ncbi.nlm.nih.gov/22053146"},"language":"en","primary_location":{"id":"doi:10.1109/cvpr.2010.5540065","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cvpr.2010.5540065","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102029636","display_name":"A G White","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A G White","raw_affiliation_strings":["Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA","BioMaPS Institute, Rutgers University, Piscataway, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"BioMaPS Institute, Rutgers University, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037485097","display_name":"Patricia G. Cipriani","orcid":"https://orcid.org/0000-0001-9772-1012"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P G Cipriani","raw_affiliation_strings":["Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049299691","display_name":"Huey\u2010Ling Kao","orcid":null},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huey-Ling Kao","raw_affiliation_strings":["Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111716385","display_name":"Brian G. Lees","orcid":null},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B Lees","raw_affiliation_strings":["Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050355939","display_name":"Davi Geiger","orcid":"https://orcid.org/0000-0003-2138-3517"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D Geiger","raw_affiliation_strings":["Department of Computer Science, New York University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068753451","display_name":"Eduardo D. Sontag","orcid":"https://orcid.org/0000-0001-8020-5783"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E Sontag","raw_affiliation_strings":["Department of Mathematics, Rutgers University, Piscataway, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Rutgers University, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077305797","display_name":"Kristin C. Gunsalus","orcid":"https://orcid.org/0000-0001-9769-4624"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K C Gunsalus","raw_affiliation_strings":["Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000657807","display_name":"F Piano","orcid":null},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F Piano","raw_affiliation_strings":["Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomics and Systems Biology and Department of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.3421,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.9375,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2010","issue":"13-18 June 2010","first_page":"3089","last_page":"3096"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.8176299333572388},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6976827383041382},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.669234573841095},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.5963380932807922},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5947036743164062},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5906588435173035},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5754894614219666},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5576954483985901},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5206784009933472},{"id":"https://openalex.org/keywords/cognitive-neuroscience-of-visual-object-recognition","display_name":"Cognitive neuroscience of visual object recognition","score":0.4931573271751404},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.47563695907592773},{"id":"https://openalex.org/keywords/layer","display_name":"Layer (electronics)","score":0.4677000045776367},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.43370765447616577},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3401608467102051},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2967175245285034}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.8176299333572388},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6976827383041382},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.669234573841095},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.5963380932807922},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5947036743164062},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5906588435173035},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5754894614219666},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5576954483985901},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5206784009933472},{"id":"https://openalex.org/C64876066","wikidata":"https://www.wikidata.org/wiki/Q5141226","display_name":"Cognitive neuroscience of visual object recognition","level":3,"score":0.4931573271751404},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.47563695907592773},{"id":"https://openalex.org/C2779227376","wikidata":"https://www.wikidata.org/wiki/Q6505497","display_name":"Layer (electronics)","level":2,"score":0.4677000045776367},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.43370765447616577},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3401608467102051},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2967175245285034},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/cvpr.2010.5540065","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cvpr.2010.5540065","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE Computer Society Conference on Computer Vision and Pattern Recognition","raw_type":"proceedings-article"},{"id":"pmid:22053146","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22053146","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition","raw_type":null},{"id":"pmh:oai:europepmc.org:2209679","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3205469","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1824874717","display_name":null,"funder_award_id":"R01 HD046236","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"}],"funders":[{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1480498941","https://openalex.org/W1492353517","https://openalex.org/W1603829220","https://openalex.org/W1607476970","https://openalex.org/W1647075334","https://openalex.org/W1944127002","https://openalex.org/W1991605728","https://openalex.org/W2038492783","https://openalex.org/W2091284527","https://openalex.org/W2091781764","https://openalex.org/W2105112945","https://openalex.org/W2113137767","https://openalex.org/W2117132491","https://openalex.org/W2124722975","https://openalex.org/W2126747264","https://openalex.org/W2128439793","https://openalex.org/W2128981808","https://openalex.org/W2133422502","https://openalex.org/W2134557905","https://openalex.org/W2137659599","https://openalex.org/W2139212933","https://openalex.org/W2144982973","https://openalex.org/W2147042601","https://openalex.org/W2149871164","https://openalex.org/W2152229373","https://openalex.org/W2153565331","https://openalex.org/W2158778629","https://openalex.org/W2161567010","https://openalex.org/W2164598857","https://openalex.org/W2165702358","https://openalex.org/W2166049352","https://openalex.org/W2471154810","https://openalex.org/W2546302380","https://openalex.org/W4230501579","https://openalex.org/W4252263986","https://openalex.org/W6635964611","https://openalex.org/W6683819913"],"related_works":["https://openalex.org/W1657880117","https://openalex.org/W2595172197","https://openalex.org/W2135248929","https://openalex.org/W2092690310","https://openalex.org/W1493624592","https://openalex.org/W3190662310","https://openalex.org/W1507878993","https://openalex.org/W2798440551","https://openalex.org/W2794767707","https://openalex.org/W2888459714"],"abstract_inverted_index":{"We":[0,119],"present":[1],"a":[2,21,44,49,138,159],"hierarchical":[3,33,82],"principle":[4],"for":[5,172],"object":[6,27],"recognition":[7,28],"and":[8,102,114,134,164],"its":[9],"application":[10],"to":[11,95,124],"automatically":[12],"classify":[13],"developmental":[14],"stages":[15],"of":[16,23,31,37,68,74,92,149],"C.":[17,129,161],"elegans":[18,130,162],"animals":[19],"from":[20,70,111,128],"population":[22],"mixed":[24],"stages.":[25],"The":[26,98,152],"machine":[29,85],"consists":[30],"four":[32],"layers,":[34],"each":[35],"composed":[36],"units":[38,73],"upon":[39],"which":[40,71],"evaluation":[41],"functions":[42],"output":[43],"label":[45],"score,":[46],"followed":[47],"by":[48,58,117,144],"grouping":[50],"mechanism":[51],"that":[52],"resolves":[53],"ambiguities":[54],"in":[55,141,155,158],"the":[56,72,75,84,93],"score":[57],"imposing":[59],"local":[60],"consistency":[61],"constraints.":[62],"Each":[63],"layer":[64,77],"then":[65],"outputs":[66],"groups":[67],"units,":[69],"next":[76],"are":[78,120],"derived.":[79],"Using":[80],"this":[81,122],"principle,":[83],"builds":[86],"up":[87],"successively":[88],"more":[89],"sophisticated":[90],"representations":[91],"objects":[94,106],"be":[96],"classified.":[97],"algorithm":[99],"segments":[100],"large":[101],"small":[103],"objects,":[104],"decomposes":[105],"into":[107],"parts,":[108,113],"extracts":[109],"features":[110],"these":[112],"classifies":[115],"them":[116],"SVM.":[118],"using":[121],"system":[123,136,153],"analyze":[125],"phenotypic":[126],"data":[127],"high-throughput":[131],"genetic":[132],"screens,":[133],"our":[135],"overcomes":[137],"previous":[139],"bottleneck":[140],"image":[142,150],"analysis":[143],"achieving":[145],"near":[146],"real-time":[147],"scoring":[148],"data.":[151],"is":[154],"current":[156],"use":[157],"functioning":[160],"laboratory":[163],"has":[165],"processed":[166],"over":[167],"two":[168],"hundred":[169],"thousand":[170],"images":[171],"lab":[173],"users.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
