{"id":"https://openalex.org/W2099369453","doi":"https://doi.org/10.1109/cts.2011.5928720","title":"Semantic infrastructure to enable collaboration in ontology development","display_name":"Semantic infrastructure to enable collaboration in ontology development","publication_year":2011,"publication_date":"2011-05-01","ids":{"openalex":"https://openalex.org/W2099369453","doi":"https://doi.org/10.1109/cts.2011.5928720","mag":"2099369453"},"language":"en","primary_location":{"id":"doi:10.1109/cts.2011.5928720","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cts.2011.5928720","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 International Conference on Collaboration Technologies and Systems (CTS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018267576","display_name":"Paul R. Alexander","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul R. Alexander","raw_affiliation_strings":["Stanford Center of Biomedical Informatics Research, University of Stanford, USA","Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center of Biomedical Informatics Research, University of Stanford, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009786707","display_name":"Csongor Nyulas","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Csongor Nyulas","raw_affiliation_strings":["Stanford Center of Biomedical Informatics Research, University of Stanford, USA","Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center of Biomedical Informatics Research, University of Stanford, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051690097","display_name":"Tania Tudorache","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tania Tudorache","raw_affiliation_strings":["Stanford Center of Biomedical Informatics Research, University of Stanford, USA","Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center of Biomedical Informatics Research, University of Stanford, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051806625","display_name":"Patricia L. Whetzel","orcid":"https://orcid.org/0000-0002-3458-4839"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patricia L. Whetzel","raw_affiliation_strings":["Stanford Center of Biomedical Informatics Research, University of Stanford, USA","Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center of Biomedical Informatics Research, University of Stanford, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111383811","display_name":"Natalya F. Noy","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalya F. Noy","raw_affiliation_strings":["Stanford Center of Biomedical Informatics Research, University of Stanford, USA","Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center of Biomedical Informatics Research, University of Stanford, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009128820","display_name":"Mark A. Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Musen","raw_affiliation_strings":["Stanford Center of Biomedical Informatics Research, University of Stanford, USA","Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center of Biomedical Informatics Research, University of Stanford, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, US#TAB#","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"423","last_page":"430"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9380000233650208,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8988932371139526},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8537704944610596},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.699870765209198},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.6470574140548706},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.6348931193351746},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5995595455169678},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5984472036361694},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.4976206123828888},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.4822843372821808},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4488164484500885},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.386149525642395},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3374295234680176},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.09366762638092041}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8988932371139526},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8537704944610596},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.699870765209198},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.6470574140548706},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.6348931193351746},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5995595455169678},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5984472036361694},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.4976206123828888},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.4822843372821808},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4488164484500885},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.386149525642395},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3374295234680176},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.09366762638092041},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cts.2011.5928720","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cts.2011.5928720","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 International Conference on Collaboration Technologies and Systems (CTS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W78944135","https://openalex.org/W1544923801","https://openalex.org/W1577703384","https://openalex.org/W1888301281","https://openalex.org/W2007859640","https://openalex.org/W2049684331","https://openalex.org/W2091729411","https://openalex.org/W2100471807","https://openalex.org/W2109904151","https://openalex.org/W2127480960","https://openalex.org/W2159583324","https://openalex.org/W2162153683","https://openalex.org/W3013535043","https://openalex.org/W3125577063","https://openalex.org/W4231824804","https://openalex.org/W4253759977","https://openalex.org/W6603174402","https://openalex.org/W6634671687","https://openalex.org/W6639706206","https://openalex.org/W6775156873"],"related_works":["https://openalex.org/W26549824","https://openalex.org/W2130691104","https://openalex.org/W2401469280","https://openalex.org/W2185688944","https://openalex.org/W2394747331","https://openalex.org/W2072752921","https://openalex.org/W2395396051","https://openalex.org/W2742693795","https://openalex.org/W2302930475","https://openalex.org/W2157407349"],"abstract_inverted_index":{"In":[0],"many":[1],"scientific":[2],"disciplines,":[3],"and":[4,18,26,30,52,81,117,124,152,168,173,177],"in":[5,7,86,101],"biomedicine":[6],"particular,":[8],"researchers":[9],"rely":[10,35],"on":[11,36,113,127,131],"ontologies":[12,23,47],"to":[13,16,40,68,71,74,77,82,97,105,109,118,144,159,165,184],"enable":[14,69],"them":[15],"annotate":[17],"integrate":[19],"their":[20,37,87,102,111,188],"data.":[21],"These":[22],"are":[24],"living":[25],"constantly":[27],"evolving":[28],"artifacts":[29],"the":[31,43,46,59,94,107,114,121,125,132,138,146,155,161,169],"ontology":[32,75,90,123,140,171],"authors":[33,91],"must":[34],"user":[38,150],"community":[39],"ensure":[41],"that":[42,141,163,180],"coverage":[44],"of":[45,149],"is":[48],"sufficient":[49],"for":[50,55,187],"annotations":[51],"other":[53],"tasks":[54],"which":[56],"users":[57,70],"deploy":[58],"ontologies.":[60],"We":[61],"have":[62],"developed":[63],"a":[64],"distributed":[65],"collaborative":[66],"mechanism":[67],"provide":[72,185],"feedback":[73,100,151],"authors,":[76],"request":[78],"new":[79],"terms,":[80],"use":[83,93,143,181],"provisional":[84],"terms":[85],"applications.":[88],"The":[89],"can":[92],"same":[95],"infrastructure":[96],"explore":[98],"this":[99,166,182],"ontology-editing":[103],"environment,":[104],"update":[106],"ontology,":[108,167],"record":[110],"decisions":[112],"users'":[115],"requests,":[116,154],"publish":[119],"both":[120],"updated":[122],"information":[126,162],"how":[128],"they":[129],"acted":[130],"requested":[133],"changes.":[134],"Specifically,":[135],"we":[136,142],"present":[137],"Notes":[139,157],"represent":[145],"different":[147],"types":[148],"change":[153],"service-oriented":[156],"API":[158,183],"access":[160],"conforms":[164],"two":[170],"editing":[172],"publishing":[174],"environments,":[175],"WebProtege":[176],"NCBO":[178],"BioPortal,":[179],"services":[186],"users.":[189]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
