{"id":"https://openalex.org/W4251704029","doi":"https://doi.org/10.1109/csb.2004.1332563","title":"SUPERCONTIGS: a contig scaffolding tool","display_name":"SUPERCONTIGS: a contig scaffolding tool","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4251704029","doi":"https://doi.org/10.1109/csb.2004.1332563"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332563","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332563","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001904731","display_name":"D. Puiu","orcid":null},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Puiu","raw_affiliation_strings":["CSBC, Virginia Commonwealth University, USA"],"affiliations":[{"raw_affiliation_string":"CSBC, Virginia Commonwealth University, USA","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001904731"],"corresponding_institution_ids":["https://openalex.org/I184840846"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.71942446,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"697","last_page":"698"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10240","display_name":"Plant tissue culture and regeneration","score":0.9707000255584717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.8930434584617615},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.8160238265991211},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6609041094779968},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.648929238319397},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6431378126144409},{"id":"https://openalex.org/keywords/clone","display_name":"clone (Java method)","score":0.5843624472618103},{"id":"https://openalex.org/keywords/closing","display_name":"Closing (real estate)","score":0.540635883808136},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.45990392565727234},{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.4465053081512451},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.44474539160728455},{"id":"https://openalex.org/keywords/scaffold","display_name":"Scaffold","score":0.4211239814758301},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3803509473800659},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.28757065534591675},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2258014976978302},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21005600690841675},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.1975547969341278},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.15147095918655396},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.09865295886993408},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09267967939376831},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07198289036750793}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.8930434584617615},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.8160238265991211},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6609041094779968},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.648929238319397},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6431378126144409},{"id":"https://openalex.org/C81089528","wikidata":"https://www.wikidata.org/wiki/Q5134986","display_name":"clone (Java method)","level":3,"score":0.5843624472618103},{"id":"https://openalex.org/C2778775528","wikidata":"https://www.wikidata.org/wiki/Q5135432","display_name":"Closing (real estate)","level":2,"score":0.540635883808136},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.45990392565727234},{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.4465053081512451},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44474539160728455},{"id":"https://openalex.org/C89429830","wikidata":"https://www.wikidata.org/wiki/Q735710","display_name":"Scaffold","level":2,"score":0.4211239814758301},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3803509473800659},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.28757065534591675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2258014976978302},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21005600690841675},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.1975547969341278},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.15147095918655396},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.09865295886993408},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09267967939376831},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07198289036750793},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332563","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332563","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W1992950355","https://openalex.org/W2095685450","https://openalex.org/W2164085656","https://openalex.org/W2166265186"],"related_works":["https://openalex.org/W2480056510","https://openalex.org/W2475789275","https://openalex.org/W2745097874","https://openalex.org/W2508823388","https://openalex.org/W2225951319","https://openalex.org/W645133142","https://openalex.org/W2992663142","https://openalex.org/W2361189437","https://openalex.org/W2103737347","https://openalex.org/W2744807401"],"abstract_inverted_index":{"SUPERCONTIGS":[0,36],"is":[1,37,47],"a":[2,20,38,52],"genome-finishing":[3],"tool":[4],"that":[5,41],"orders,":[6],"orients":[7],"and":[8,16,32],"groups":[9],"contigs":[10],"based":[11],"on":[12,43],"clone":[13],"pair":[14],"information":[15],"an":[17],"alignment":[18],"with":[19],"related":[21],"genome.":[22],"The":[23],"program":[24],"can":[25],"be":[26],"used":[27],"in":[28],"the":[29],"genome":[30],"finishing":[31],"gap":[33],"closing":[34],"process.":[35],"Perl":[39],"script":[40],"runs":[42],"Unix-like":[44],"systems.":[45],"It":[46],"available":[48],"at":[49],"http://www.vcu.edu/csbc/bccl/research-downloads.htm":[50],"as":[51],"copy-left":[53],"public":[54],"domain":[55],"program.":[56]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
