{"id":"https://openalex.org/W4233864397","doi":"https://doi.org/10.1109/csb.2004.1332558","title":"Identifying microRNAs in plant genomes","display_name":"Identifying microRNAs in plant genomes","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4233864397","doi":"https://doi.org/10.1109/csb.2004.1332558"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332558","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332558","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066136254","display_name":"C. Maher","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C. Maher","raw_affiliation_strings":["Cold Spring Harbor Laboratory, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048800088","display_name":"M. Timmermans","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Timmermans","raw_affiliation_strings":["Cold Spring Harbor Laboratory, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033640402","display_name":"L. Stein","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Stein","raw_affiliation_strings":["Cold Spring Harbor Laboratory, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070666072","display_name":"D. Ware","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Ware","raw_affiliation_strings":["Cold Spring Harbor Laboratory, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, USA","institution_ids":["https://openalex.org/I2750212522"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066136254"],"corresponding_institution_ids":["https://openalex.org/I2750212522"],"apc_list":null,"apc_paid":null,"fwci":2.4909,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.90441176,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"288","issue":null,"first_page":"681","last_page":"686"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7559225559234619},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7189248204231262},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5923759937286377},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5496415495872498},{"id":"https://openalex.org/keywords/meristem","display_name":"Meristem","score":0.5479419827461243},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5451896786689758},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.5187492370605469},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5106883645057678},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4425158202648163},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41789981722831726},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.10225427150726318}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7559225559234619},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7189248204231262},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5923759937286377},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5496415495872498},{"id":"https://openalex.org/C126021549","wikidata":"https://www.wikidata.org/wiki/Q207604","display_name":"Meristem","level":3,"score":0.5479419827461243},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5451896786689758},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.5187492370605469},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5106883645057678},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4425158202648163},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41789981722831726},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.10225427150726318}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/csb.2004.1332558","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332558","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.127.6960","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.127.6960","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ieeexplore.ieee.org/iel5/9262/29416/01332558.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.403.9364","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.403.9364","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ftp.dec.com/pub/toomany/151_Maher_Christopher_miRNA_updated.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.5799999833106995}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1494052290","https://openalex.org/W1519185585","https://openalex.org/W1980269624","https://openalex.org/W1989359751","https://openalex.org/W1998743995","https://openalex.org/W2024177760","https://openalex.org/W2044285871","https://openalex.org/W2053915285","https://openalex.org/W2102802740","https://openalex.org/W2106882534","https://openalex.org/W2134995632","https://openalex.org/W2137257434","https://openalex.org/W2162252960","https://openalex.org/W4211039187","https://openalex.org/W4212941976","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W3147805512","https://openalex.org/W1498812349","https://openalex.org/W2011699422","https://openalex.org/W4385352654","https://openalex.org/W2046045458","https://openalex.org/W1976583488","https://openalex.org/W2113386331","https://openalex.org/W1608454690","https://openalex.org/W2231927015","https://openalex.org/W2075907762"],"abstract_inverted_index":{"The":[0],"ability":[1],"to":[2,18,64,106],"control":[3,31],"gene":[4],"expression":[5,48],"during":[6],"development":[7],"in":[8,70,110,141],"plants":[9],"could":[10],"be":[11],"used":[12,105],"for":[13,136],"improving":[14],"crop":[15],"yields,":[16],"resistance":[17],"disease,":[19],"and":[20,41,86,102,143],"environmental":[21],"adaptability.":[22],"It":[23],"has":[24,61],"been":[25,62],"suggested":[26],"that":[27,98],"microRNAs,":[28],"or":[29],"miRNAs,":[30],"developmental":[32,42],"processes":[33],"such":[34],"as":[35],"meristem":[36],"cell":[37],"identity,":[38],"organ":[39],"polarity,":[40],"timing":[43],"by":[44,119],"interfering":[45],"with":[46,125],"the":[47,56,111,134],"of":[49,67],"mRNAs.":[50],"Our":[51],"preliminary":[52],"analysis":[53,135],"focuses":[54],"on":[55,73],"miR166":[57],"family":[58],"since":[59],"it":[60],"shown":[63],"mediate":[65],"repression":[66],"rolled-leaf1":[68],"(rdl1)":[69],"maize.":[71,144],"Based":[72],"maize":[74,92],"sequences":[75],"derived":[76],"from":[77],"degenerate":[78],"primers,":[79],"we":[80,132],"computationally":[81],"identified":[82],"miR166b,":[83],"miR166c,":[84],"miR166d,":[85],"four":[87],"more":[88],"closely":[89],"related":[90],"putative":[91,112],"precursors.":[93],"Patscan,":[94],"a":[95],"pattern-matching":[96],"program":[97],"allows":[99],"RNA":[100],"basepairing":[101],"mismatches,":[103],"was":[104,116],"identify":[107],"functional":[108],"elements":[109],"hairpins.":[113],"Each":[114],"hairpin":[115],"further":[117],"supported":[118],"their":[120],"stable":[121],"secondary":[122],"structures":[123],"determined":[124],"Mfold.":[126],"Using":[127],"this":[128],"pattern":[129],"matching":[130],"approach":[131],"expanded":[133],"19":[137],"Arabidopsis":[138],"miRNA":[139],"families":[140],"rice":[142]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}