{"id":"https://openalex.org/W4238588805","doi":"https://doi.org/10.1109/csb.2004.1332553","title":"A new method of secondary structure assignment based on the delaunay tessellation of protein structures","display_name":"A new method of secondary structure assignment based on the delaunay tessellation of protein structures","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4238588805","doi":"https://doi.org/10.1109/csb.2004.1332553"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332553","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332553","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026126312","display_name":"T. Taylor","orcid":null},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T. Taylor","raw_affiliation_strings":["School of Computational Sciences, George Mason University, Manassas, VA, USA"],"affiliations":[{"raw_affiliation_string":"School of Computational Sciences, George Mason University, Manassas, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013389067","display_name":"I. Vaisman","orcid":null},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"I. Vaisman","raw_affiliation_strings":["School of Computational Sciences, George Mason University, Manassas, VA, USA"],"affiliations":[{"raw_affiliation_string":"School of Computational Sciences, George Mason University, Manassas, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5026126312"],"corresponding_institution_ids":["https://openalex.org/I162714631"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.77477477,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"567","issue":null,"first_page":"671","last_page":"672"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/delaunay-triangulation","display_name":"Delaunay triangulation","score":0.744386613368988},{"id":"https://openalex.org/keywords/tessellation","display_name":"Tessellation (computer graphics)","score":0.6829888820648193},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.5115245580673218},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.5036088824272156},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.49451300501823425},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4018319845199585},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3928576111793518},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.38589322566986084},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.2942054867744446},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18151697516441345},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14060074090957642}],"concepts":[{"id":"https://openalex.org/C68010082","wikidata":"https://www.wikidata.org/wiki/Q192445","display_name":"Delaunay triangulation","level":2,"score":0.744386613368988},{"id":"https://openalex.org/C43817857","wikidata":"https://www.wikidata.org/wiki/Q9357547","display_name":"Tessellation (computer graphics)","level":2,"score":0.6829888820648193},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.5115245580673218},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.5036088824272156},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.49451300501823425},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4018319845199585},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3928576111793518},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.38589322566986084},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.2942054867744446},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18151697516441345},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14060074090957642},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332553","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332553","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.5400000214576721}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2008708467","https://openalex.org/W2012334384","https://openalex.org/W2035352107","https://openalex.org/W2122468718","https://openalex.org/W2125055259","https://openalex.org/W2130179054","https://openalex.org/W2130565327","https://openalex.org/W2141920771","https://openalex.org/W2153153865","https://openalex.org/W2998589874","https://openalex.org/W3203298545","https://openalex.org/W4242212377","https://openalex.org/W6801905623"],"related_works":["https://openalex.org/W2359979928","https://openalex.org/W2368353614","https://openalex.org/W2390369954","https://openalex.org/W1529719486","https://openalex.org/W4232052003","https://openalex.org/W2373917503","https://openalex.org/W2906423005","https://openalex.org/W2385297469","https://openalex.org/W2001914902","https://openalex.org/W2035847161"],"abstract_inverted_index":{"A":[0],"five":[1],"element":[2],"descriptor":[3,23,53],"derived":[4],"from":[5],"the":[6,20,29,32,40,52],"Delaunay":[7],"tessellation":[8],"of":[9,31],"a":[10],"protein":[11],"structure":[12,43],"can":[13,45],"be":[14,46],"assigned":[15],"to":[16,39],"each":[17],"residue":[18,74],"in":[19,28],"protein.":[21],"The":[22],"characterizes":[24],"main":[25],"chain":[26],"topology":[27],"neighborhood":[30],"residue.":[33],"Rules":[34],"which":[35,48],"accurately":[36],"map":[37],"it":[38,69],"DSSP":[41],"secondary":[42],"assignment":[44],"devised,":[47],"is":[49],"surprising":[50],"because":[51],"does":[54,68],"not":[55],"explicitly":[56],"depend":[57],"on":[58,72],"any":[59],"angles,":[60],"lengths,":[61],"areas,":[62],"or":[63],"putative":[64],"hydrogen":[65],"bonds,":[66],"nor":[67],"contain":[70],"information":[71],"internal":[73],"geometry.":[75]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}