{"id":"https://openalex.org/W4255030670","doi":"https://doi.org/10.1109/csb.2004.1332551","title":"Automatic prediction of functional site regions in low-resolution protein structures","display_name":"Automatic prediction of functional site regions in low-resolution protein structures","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4255030670","doi":"https://doi.org/10.1109/csb.2004.1332551"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332551","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332551","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":"1752-7791","issn":["1752-7791"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071781101","display_name":"J.S. Sodhi","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J.S. Sodhi","raw_affiliation_strings":["Department of Computer Science, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082383533","display_name":"L.J. McGuffin","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"L.J. McGuffin","raw_affiliation_strings":["Department of Computer Science, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079871384","display_name":"K. Bryson","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"K. Bryson","raw_affiliation_strings":["Department of Computer Science, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030005080","display_name":"J.J. Ward","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J.J. Ward","raw_affiliation_strings":["Department of Computer Science, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043492139","display_name":"L. Wernisch","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"L. Wernisch","raw_affiliation_strings":["Department of Computer Science, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049885935","display_name":"D.T. Jones","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D.T. Jones","raw_affiliation_strings":["Department of Computer Science, University College London, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"667","last_page":"668"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6986379623413086},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6946685314178467},{"id":"https://openalex.org/keywords/structural-genomics","display_name":"Structural genomics","score":0.6139996647834778},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5570011138916016},{"id":"https://openalex.org/keywords/low-resolution","display_name":"Low resolution","score":0.5433216691017151},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4777480959892273},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4677678942680359},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43465086817741394},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40802082419395447},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.38632720708847046},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.38567718863487244},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10859298706054688},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.10492134094238281}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6986379623413086},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6946685314178467},{"id":"https://openalex.org/C192772702","wikidata":"https://www.wikidata.org/wiki/Q2583975","display_name":"Structural genomics","level":3,"score":0.6139996647834778},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5570011138916016},{"id":"https://openalex.org/C3019883945","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Low resolution","level":3,"score":0.5433216691017151},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4777480959892273},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4677678942680359},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43465086817741394},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40802082419395447},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.38632720708847046},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.38567718863487244},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10859298706054688},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.10492134094238281},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/csb.2004.1332551","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332551","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":"1752-7791","issn":["1752-7791"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},{"id":"pmh:oai:centaur.reading.ac.uk:27433","is_oa":false,"landing_page_url":"https://centaur.reading.ac.uk/27433/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402273","display_name":"CentAUR (University of Reading)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71052956","host_organization_name":"University of Reading","host_organization_lineage":["https://openalex.org/I71052956"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book or Report Section"},{"id":"pmh:oai:eprints.gla.ac.uk:269975","is_oa":false,"landing_page_url":"https://eprints.gla.ac.uk/269975/","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Proceedings"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1993826818","https://openalex.org/W2144483796","https://openalex.org/W2147059525","https://openalex.org/W2164864731","https://openalex.org/W2170983974"],"related_works":["https://openalex.org/W2384478968","https://openalex.org/W1975122118","https://openalex.org/W2346580382","https://openalex.org/W2946599741","https://openalex.org/W2170471837","https://openalex.org/W2015390241","https://openalex.org/W2593264178","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2118652015"],"abstract_inverted_index":{"World-wide":[0],"structural":[1,18,30,112],"genomics":[2],"initiatives":[3],"are":[4,21],"rapidly":[5],"accumulating":[6],"structures":[7,48],"for":[8,95,138],"which":[9],"limited":[10],"functional":[11,40],"information":[12],"is":[13,83],"available.":[14],"Additionally,":[15],"state-of-the":[16],"art":[17],"prediction":[19],"programs":[20],"now":[22],"capable":[23],"of":[24,32,39,74,127,146],"generating":[25],"at":[26],"least":[27],"low":[28,110],"resolution":[29,111],"models":[31,113,142],"target":[33],"proteins.":[34],"Accurate":[35],"detection":[36,60,108,136],"and":[37,45,72],"classification":[38],"sites":[41,77],"within":[42],"both":[43],"solved":[44],"modelled":[46],"protein":[47,79,141],"therefore":[49],"represents":[50],"an":[51],"important":[52,76],"challenge.":[53],"We":[54,131],"present":[55],"a":[56,125],"fully":[57],"automatic":[58],"site":[59,107,135],"method,":[61],"FuncSite,":[62],"that":[63],"uses":[64],"neural":[65],"network":[66],"classifiers":[67],"to":[68,86,99,104,117],"predict":[69],"the":[70,93,144,147],"location":[71],"type":[73],"functionally":[75],"in":[78,109],"structures.":[80,130],"The":[81],"method":[82],"designed":[84],"primarily":[85],"require":[87],"only":[88],"backbone":[89],"residue":[90],"positions":[91],"without":[92],"need":[94],"specific":[96],"side-chain":[97],"atoms":[98],"be":[100],"present.":[101],"In":[102],"order":[103],"highlight":[105],"effective":[106,133],"FuncSite":[114],"was":[115],"used":[116],"screen":[118],"model":[119],"proteins":[120],"generated":[121],"using":[122],"mGenTHREADER":[123],"on":[124],"set":[126],"newly":[128],"released":[129],"found":[132],"metal":[134],"even":[137],"moderate":[139],"quality":[140],"illustrating":[143],"robustness":[145],"method.":[148]},"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
