{"id":"https://openalex.org/W2122525160","doi":"https://doi.org/10.1109/csb.2004.1332526","title":"Parallel Extreme Pathway Computation for Metabolic Networks","display_name":"Parallel Extreme Pathway Computation for Metabolic Networks","publication_year":2004,"publication_date":"2004-06-10","ids":{"openalex":"https://openalex.org/W2122525160","doi":"https://doi.org/10.1109/csb.2004.1332526","mag":"2122525160"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332526","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332526","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.osti.gov/biblio/1441977","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023155564","display_name":"Lie\u2010Quan Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210120900","display_name":"Stanford Synchrotron Radiation Lightsource","ror":"https://ror.org/02vzbm991","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I4210120900","https://openalex.org/I97018004","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"L Lee","raw_affiliation_strings":["Stanford Linear Accelerator Center, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Linear Accelerator Center, CA, USA","institution_ids":["https://openalex.org/I4210120900","https://openalex.org/I2801935854"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5023155564"],"corresponding_institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210120900"],"apc_list":null,"apc_paid":null,"fwci":0.9476,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.73392461,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"605","last_page":"608"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.6383043527603149},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5428914427757263},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4808269739151001},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1802869737148285}],"concepts":[{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.6383043527603149},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5428914427757263},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4808269739151001},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1802869737148285}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/csb.2004.1332526","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332526","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},{"id":"doi:10.2172/827001","is_oa":false,"landing_page_url":"https://doi.org/10.2172/827001","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SLAC National Accelerator Laboratory (SLAC)","raw_type":"report"},{"id":"mag:2122525160","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1441977","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","raw_type":null},{"id":"pmh:oai:osti.gov:827001","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/827001","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"mag:2122525160","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1441977","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1487827847","https://openalex.org/W1964491374","https://openalex.org/W1994656497","https://openalex.org/W2037614307","https://openalex.org/W2094399313","https://openalex.org/W2117486132","https://openalex.org/W2180208126","https://openalex.org/W6629173679"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"We":[0],"parallelized":[1],"the":[2,19,31,39,48,90,94],"serial":[3],"extreme":[4,68],"pathways":[5,69],"algorithm":[6,26],"presented":[7],"by":[8],"Schilling":[9],"et":[10],"al.,":[11],"in":[12,75],"J.":[13],"Theor.":[14],"Biol.":[15],"203":[16],"(2000)":[17],"using":[18,79],"Message":[20],"Passing":[21],"Interface":[22],"(MPI).":[23],"The":[24,67],"parallel":[25],"exhibits":[27],"super-linear":[28],"scalability":[29],"because":[30],"number":[32,40],"of":[33,41,47,51,70,93],"independence":[34],"tests":[35],"performed":[36],"decreases":[37],"as":[38,64],"MPI":[42],"nodes":[43,92],"increases.":[44],"A":[45],"subsystem":[46],"metabolic":[49],"network":[50],"Escherichia":[52],"coli":[53],"with":[54,86],"140":[55],"reactions":[56],"and":[57],"96":[58],"metabolites":[59],"(without":[60],"preprocessing)":[61],"is":[62],"used":[63],"a":[65],"benchmark.":[66],"this":[71],"system":[72],"are":[73],"computed":[74],"under":[76],"280":[77],"seconds":[78],"70":[80],"2.4":[81],"GHz":[82],"Intel":[83],"Pentium-IV":[84],"CPUs":[85],"Myrinet":[87],"interconnection":[88],"among":[89],"dual-CPU":[91],"Linux":[95],"cluster.":[96]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
