{"id":"https://openalex.org/W4234626670","doi":"https://doi.org/10.1109/csb.2004.1332524","title":"Inference of gene regulatory network based on module network model with gene functional classi .cations","display_name":"Inference of gene regulatory network based on module network model with gene functional classi .cations","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4234626670","doi":"https://doi.org/10.1109/csb.2004.1332524"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332524","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332524","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":"1752-7791","issn":["1752-7791"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075340609","display_name":"K. Taki","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Taki","raw_affiliation_strings":["Graduate School of Information Science and Technology, Osaka University, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Information Science and Technology, Osaka University, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091199141","display_name":"R. Teramoto","orcid":null},"institutions":[{"id":"https://openalex.org/I31591830","display_name":"Sumitomo Dainippon Pharma (Japan)","ror":"https://ror.org/04sapgw72","country_code":"JP","type":"company","lineage":["https://openalex.org/I31591830"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"R. Teramoto","raw_affiliation_strings":["Research Division, Sumitomo Pharmaceuticals Company Limited, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Division, Sumitomo Pharmaceuticals Company Limited, Japan","institution_ids":["https://openalex.org/I31591830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043707615","display_name":"Y. Takenaka","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Takenaka","raw_affiliation_strings":["Graduate School of Information Science and Technology, Osaka University, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Information Science and Technology, Osaka University, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029041468","display_name":"H. Matsuda","orcid":null},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Matsuda","raw_affiliation_strings":["Graduate School of Information Science and Technology, Osaka University, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Information Science and Technology, Osaka University, Japan","institution_ids":["https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.38839095,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"601","last_page":"602"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7474757432937622},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.7121739387512207},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.677126944065094},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6516528129577637},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5714232921600342},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5104962587356567},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4813328683376312},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4798123836517334},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43970412015914917},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38766634464263916},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28214114904403687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25986984372138977},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19423970580101013}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7474757432937622},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.7121739387512207},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.677126944065094},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6516528129577637},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5714232921600342},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5104962587356567},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4813328683376312},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4798123836517334},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43970412015914917},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38766634464263916},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28214114904403687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25986984372138977},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19423970580101013},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332524","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332524","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":"1752-7791","issn":["1752-7791"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2103453943","https://openalex.org/W2127563440","https://openalex.org/W2167190345"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W1603736412","https://openalex.org/W4304185162","https://openalex.org/W4321636575","https://openalex.org/W2061685118","https://openalex.org/W2950199998","https://openalex.org/W2560421304","https://openalex.org/W2951387065","https://openalex.org/W4385727351","https://openalex.org/W4306798985"],"abstract_inverted_index":{"We":[0,64],"propose":[1],"a":[2,33,36,44],"novel":[3],"method":[4,21,53,67,80,98],"for":[5],"an":[6],"exhaustive":[7],"inference":[8],"of":[9,38,70,73],"gene":[10,57],"regulatory":[11,47,104],"networks":[12,72],"from":[13],"genome-wide":[14],"expression":[15,62],"data":[16],"and":[17,43],"biological":[18],"knowledge.":[19],"Our":[20,52],"performs":[22],"the":[23,31,50,71],"inferences":[24,69],"based":[25],"on":[26,86,90],"module":[27,34],"network":[28,45],"model.":[29],"In":[30],"model":[32],"is":[35],"set":[37],"genes":[39],"with":[40,61,83],"similar":[41],"features,":[42],"represents":[46],"relationships":[48],"among":[49],"modules.":[51],"makes":[54],"modules":[55,94],"using":[56],"functional":[58],"classification":[59],"together":[60],"data.":[63],"apply":[65],"our":[66,79,97],"to":[68,101],"yeast":[74,87],"cell-cycle.":[75],"Modules":[76],"inferred":[77],"by":[78,96],"show":[81],"consistency":[82],"experimentally-determined":[84],"results":[85],"cell-cycle,":[88],"especially":[89],"G1":[91],"phase.":[92],"Robust":[93],"built":[95],"permit":[99],"us":[100],"infer":[102],"informative":[103],"relationships.":[105]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}