{"id":"https://openalex.org/W4231152591","doi":"https://doi.org/10.1109/csb.2004.1332515","title":"A genetic algorithm for inferring time delays in gene regulatory networks","display_name":"A genetic algorithm for inferring time delays in gene regulatory networks","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4231152591","doi":"https://doi.org/10.1109/csb.2004.1332515"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332515","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332515","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":"1752-7791","issn":["1752-7791"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Biomedical Engineering, University of Saskatchewan, Saskatoon, SAS, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Saskatchewan, Saskatoon, SAS, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008778616","display_name":"A.J. Kusalik","orcid":null},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"A.J. Kusalik","raw_affiliation_strings":["Department of Computer Science, University of Saskatchewan, Saskatoon, SAS, Canada","University of Saskatchewan, Saskatoon, SK, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Saskatchewan, Saskatoon, SAS, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"University of Saskatchewan, Saskatoon, SK, CA","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":null,"display_name":"Wen-Jun Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wen-Jun Zhang","raw_affiliation_strings":["Dept. of Biomedical Eng., Saskatchewan Univ., Saskatoon, Sask., Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Biomedical Eng., Saskatchewan Univ., Saskatoon, Sask., Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I32625721"],"apc_list":null,"apc_paid":null,"fwci":0.7365,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.80857875,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"4","issue":null,"first_page":"579","last_page":"580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.7001535296440125},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6433010101318359},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.593644917011261},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.5598287582397461},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47300201654434204},{"id":"https://openalex.org/keywords/genetic-network","display_name":"Genetic network","score":0.44087615609169006},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33324486017227173},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.29036757349967957},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.16338077187538147},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1430695652961731},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13058263063430786},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12571924924850464}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.7001535296440125},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6433010101318359},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.593644917011261},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.5598287582397461},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47300201654434204},{"id":"https://openalex.org/C2986044853","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Genetic network","level":3,"score":0.44087615609169006},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33324486017227173},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.29036757349967957},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.16338077187538147},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1430695652961731},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13058263063430786},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12571924924850464}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332515","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332515","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":"1752-7791","issn":["1752-7791"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1481919380","https://openalex.org/W1976110793","https://openalex.org/W2008107402","https://openalex.org/W2037430361","https://openalex.org/W2082982706","https://openalex.org/W2087585655","https://openalex.org/W2125027820","https://openalex.org/W2168175751","https://openalex.org/W6628887588","https://openalex.org/W6671346601"],"related_works":["https://openalex.org/W2794960257","https://openalex.org/W2330768201","https://openalex.org/W2108120899","https://openalex.org/W2128085946","https://openalex.org/W2349909726","https://openalex.org/W2802063128","https://openalex.org/W4319977964","https://openalex.org/W4385417763","https://openalex.org/W2099449343","https://openalex.org/W4213370924"],"abstract_inverted_index":{"Recently":[0],"we":[1],"proposed":[2],"a":[3,65,92,125],"state-space":[4],"model":[5],"with":[6,85,113],"time":[7,53,86,114,144],"delays":[8,54],"for":[9],"gene":[10,82,94,140],"regulatory":[11,57,83,111,141],"networks.":[12],"Although":[13],"the":[14,23,38,48,51,56,60,71,104,110,118,121,129,133],"system":[15],"can":[16],"be":[17],"uniquely":[18],"determined":[19],"under":[20],"some":[21],"assumptions,":[22],"solution":[24],"space":[25],"is":[26,100],"still":[27],"too":[28],"large":[29],"to":[30,36,46,69,79,139],"use":[31],"an":[32],"exhaustive":[33],"search":[34],"method":[35],"find":[37],"optimal":[39,72,76,105],"solution.":[40,106],"This":[41],"work":[42],"employs":[43],"Boolean":[44,73],"variables":[45,74],"capture":[47],"existence":[49],"of":[50,55,124],"discrete":[52],"relationships":[58],"among":[59],"internal":[61],"variables,":[62],"and":[63,78],"proposes":[64],"genetic":[66],"algorithm":[67],"(GA)":[68],"determine":[70],"(the":[75],"solution)":[77],"further":[80],"infer":[81],"networks":[84],"delays.":[87,145],"Computational":[88],"experiments":[89],"performed":[90],"on":[91],"real":[93,126],"expression":[95],"dataset":[96,119],"show":[97],"that":[98],"GA":[99],"effective":[101],"at":[102],"finding":[103],"Not":[107],"only":[108],"does":[109],"network":[112,142],"delay":[115],"obtained":[116],"from":[117],"possesses":[120],"expected":[122],"properties":[123],"one,":[127],"but":[128],"approach":[130],"also":[131],"improves":[132],"prediction":[134],"accuracy":[135],"by":[136],"72%,":[137],"compared":[138],"without":[143]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
