{"id":"https://openalex.org/W4249494993","doi":"https://doi.org/10.1109/csb.2004.1332504","title":"The dynamic range of gene expressions depend on their ontology","display_name":"The dynamic range of gene expressions depend on their ontology","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4249494993","doi":"https://doi.org/10.1109/csb.2004.1332504"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332504","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332504","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109576716","display_name":"Yizhou Xie","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Yizhou Xie","raw_affiliation_strings":["Max McGee National Research Center for Juvenile Diabetes, Medical College, Milwaukee, WI, USA"],"affiliations":[{"raw_affiliation_string":"Max McGee National Research Center for Juvenile Diabetes, Medical College, Milwaukee, WI, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053538255","display_name":"S. Ghosh","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S. Ghosh","raw_affiliation_strings":["Max McGee National Research Center for Juvenile Diabetes, Medical College, Milwaukee, WI, USA"],"affiliations":[{"raw_affiliation_string":"Max McGee National Research Center for Juvenile Diabetes, Medical College, Milwaukee, WI, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050759690","display_name":"P. Jailwalia","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Jailwalia","raw_affiliation_strings":["Max McGee National Research Center for Juvenile Diabetes, and Human and Molecular Genetics Center, Medical College, Milwaukee, WI, USA"],"affiliations":[{"raw_affiliation_string":"Max McGee National Research Center for Juvenile Diabetes, and Human and Molecular Genetics Center, Medical College, Milwaukee, WI, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102788743","display_name":"Xujing Wang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xujing Wang","raw_affiliation_strings":["Max McGee National Research Center for Juvenile Diabetes, and Human and Molecular Genetics Center, Medical College, Milwaukee, WI, USA"],"affiliations":[{"raw_affiliation_string":"Max McGee National Research Center for Juvenile Diabetes, and Human and Molecular Genetics Center, Medical College, Milwaukee, WI, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5109576716"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.49886105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"553","last_page":"554"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.7968147993087769},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.6303843259811401},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5688333511352539},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.542339026927948},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.5243701934814453},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5097017288208008},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5086734890937805},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.48198336362838745},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4784848093986511},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.45872801542282104},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42648792266845703},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41736122965812683},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.39189040660858154},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33829206228256226},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29939359426498413},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22428634762763977}],"concepts":[{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.7968147993087769},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.6303843259811401},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5688333511352539},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.542339026927948},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.5243701934814453},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5097017288208008},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5086734890937805},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.48198336362838745},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4784848093986511},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.45872801542282104},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42648792266845703},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41736122965812683},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.39189040660858154},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33829206228256226},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29939359426498413},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22428634762763977},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332504","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332504","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2103453943"],"related_works":["https://openalex.org/W2796636403","https://openalex.org/W2364565895","https://openalex.org/W2015700328","https://openalex.org/W2767847608","https://openalex.org/W2911678823","https://openalex.org/W2152648570","https://openalex.org/W2037892364","https://openalex.org/W2319154570","https://openalex.org/W3152114242","https://openalex.org/W2046672733"],"abstract_inverted_index":{"In":[0],"this":[1],"study":[2,98],"we":[3],"investigate":[4],"the":[5,8,35,39,52,56],"correlation":[6],"between":[7],"normal":[9],"variation":[10,40],"of":[11,19,41,51,55,86,105],"gene":[12],"expressions":[13],"and":[14,38,61,69,102],"their":[15],"ontologies.":[16],"Three":[17],"sets":[18],"time-series":[20],"microarray":[21,109],"data":[22,103,107],"are":[23,72],"utilized":[24],"that":[25],"represent":[26],"three":[27,90],"different":[28],"but":[29],"typical":[30],"physiological/developmental":[31],"processes.":[32,91],"We":[33],"analyze":[34],"dynamic":[36,84],"range":[37,85],"expression":[42,87],"levels":[43],"during":[44],"these":[45],"processes":[46],"for":[47],"genes":[48],"in":[49,88],"each":[50],"top-level":[53],"ontologies":[54],"biological":[57],"process,":[58],"molecular":[59],"function":[60],"cellular":[62],"component,":[63],"as":[64],"defined":[65],"by":[66],"GO.":[67],"Significant":[68],"consistent":[70,82],"differences":[71],"observed.":[73],"For":[74],"example,":[75],"transcription":[76],"factors":[77],"were":[78],"found":[79],"to":[80],"have":[81],"narrower":[83],"all":[89],"The":[92],"findings":[93],"will":[94],"shed":[95],"light":[96],"on":[97],"design,":[99],"statistical":[100],"evaluation,":[101],"mining":[104],"genetic":[106],"including":[108],"data.":[110]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
