{"id":"https://openalex.org/W4249562467","doi":"https://doi.org/10.1109/csb.2004.1332482","title":"EcMLST: an online database for multi locus sequence typing of pathogenic escherichia coli","display_name":"EcMLST: an online database for multi locus sequence typing of pathogenic escherichia coli","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4249562467","doi":"https://doi.org/10.1109/csb.2004.1332482"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332482","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332482","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089938252","display_name":"Weihong Qi","orcid":"https://orcid.org/0000-0001-8581-908X"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Weihong Qi","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033828344","display_name":"David W. Lacher","orcid":"https://orcid.org/0000-0001-8674-7241"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D.W. Lacher","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079590529","display_name":"Alyssa C. Bumbaugh","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A.C. Bumbaugh","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056776826","display_name":"Katie E. Hyma","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K.E. Hyma","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064099036","display_name":"Lindsey Ouellette","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L.M. Ouellette","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110900246","display_name":"Teresa M. Large","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T.M. Large","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041499103","display_name":"Cheryl L. Tarr","orcid":"https://orcid.org/0000-0001-6290-365X"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C.L. Tarr","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074430162","display_name":"Thomas S. Whittam","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T.S. Whittam","raw_affiliation_strings":["Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA"],"affiliations":[{"raw_affiliation_string":"Microbial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, USA","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5089938252"],"corresponding_institution_ids":["https://openalex.org/I87216513"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"499","last_page":"500"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"Multilocus sequence typing","score":0.78734290599823},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6384241580963135},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5580922961235046},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5397127866744995},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.5060929656028748},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4339714050292969},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34914928674697876},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3346828818321228},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23388570547103882},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17248210310935974}],"concepts":[{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.78734290599823},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6384241580963135},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5580922961235046},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5397127866744995},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.5060929656028748},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4339714050292969},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34914928674697876},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3346828818321228},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23388570547103882},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17248210310935974},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332482","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332482","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2083587510","https://openalex.org/W2142503351","https://openalex.org/W2168973227"],"related_works":["https://openalex.org/W2941777425","https://openalex.org/W2030437188","https://openalex.org/W2771955576","https://openalex.org/W2023410356","https://openalex.org/W4211050334","https://openalex.org/W1984563346","https://openalex.org/W1967917710","https://openalex.org/W4210384666","https://openalex.org/W2002948709","https://openalex.org/W3184364899"],"abstract_inverted_index":{"In":[0],"order":[1],"to":[2,19,120,140],"provide":[3],"a":[4,59,81],"portable":[5],"and":[6,41,58,68,104,124,159,163],"accurate":[7],"typing":[8,32,123],"system":[9,46,167],"for":[10,29,73,113,161],"the":[11,20,53,65,75,85,93,98,121,141],"unambiguous":[12],"characterization":[13],"of":[14,33,48,52,61,109,144],"pathogenic":[15,34],"Escherichia":[16],"coli":[17,36,55,117,148],"isolates":[18],"scientific":[21],"community,":[22],"we":[23],"have":[24],"constructed":[25],"an":[26,49],"online":[27],"database":[28,66,95,99],"multilocus":[30],"sequence":[31,102],"E.":[35,54,116,147],"(EcMLST)":[37],"using":[38],"current":[39],"Internet":[40],"open":[42],"source":[43],"technology.":[44],"The":[45,89,166],"consists":[47],"XML":[50],"specification":[51],"MLST":[56],"system,":[57],"set":[60],"peri":[62],"modules":[63],"defining":[64],"tables":[67],"generating":[69],"dynamic":[70],"Web":[71],"pages":[72],"querying":[74],"database.":[76],"It":[77],"is":[78,92,127],"implemented":[79],"on":[80],"Sun":[82],"server":[83],"running":[84],"Apache":[86],"web":[87],"server.":[88],"underlying":[90],"tier":[91],"MySQL":[94],"system.":[96],"Currently,":[97],"contains":[100],"nucleotide":[101],"data":[103,108,126],"annotated":[105],"allelic":[106],"profile":[107],"15":[110],"house-keeping":[111],"genes":[112],"600":[114],"representative":[115],"isolates.":[118],"Access":[119],"central-held":[122],"epidemiology":[125,162],"supported":[128],"by":[129,155],"parametric":[130],"searching,":[131,133],"full-text":[132],"as":[134,136],"well":[135],"query":[137],"interface":[138],"links":[139],"reference":[142],"center":[143],"Shiga":[145],"toxin-producing":[146],"(STEC,":[149],"http://www.shigatox.net/stec).":[150],"EcMLST":[151],"has":[152],"been":[153],"used":[154],"public":[156],"health":[157],"laboratories":[158],"researchers":[160],"evolutionary":[164],"studies.":[165],"can":[168],"be":[169],"accessed":[170],"at":[171],"http://www.shigatox.net/mlst.":[172]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}