{"id":"https://openalex.org/W4249201511","doi":"https://doi.org/10.1109/csb.2004.1332479","title":"Embedded computation of maximum-likelihood phylogeny inference using platform FPGA","display_name":"Embedded computation of maximum-likelihood phylogeny inference using platform FPGA","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4249201511","doi":"https://doi.org/10.1109/csb.2004.1332479"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332479","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332479","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003879522","display_name":"T.S.T. Mak","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"T.S.T. Mak","raw_affiliation_strings":["Department of System Engineering and Engineering Management, Chinese University of Hong Kong, Sha Tin, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of System Engineering and Engineering Management, Chinese University of Hong Kong, Sha Tin, Hong Kong, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022484980","display_name":"K.P. Lam","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"K.P. Lam","raw_affiliation_strings":["Department of System Engineering and Engineering Management, Chinese University of Hong Kong, Sha Tin, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of System Engineering and Engineering Management, Chinese University of Hong Kong, Sha Tin, Hong Kong, China","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003879522"],"corresponding_institution_ids":["https://openalex.org/I177725633"],"apc_list":null,"apc_paid":null,"fwci":0.4612,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.66970387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"491","last_page":"493"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9555000066757202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.8473103046417236},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7041706442832947},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6110941767692566},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.5693857669830322},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5619687438011169},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5446521639823914},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5132675170898438},{"id":"https://openalex.org/keywords/gate-array","display_name":"Gate array","score":0.4567365348339081},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.4137859344482422},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.3586537837982178},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1639525294303894},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1379358470439911},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09322202205657959}],"concepts":[{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.8473103046417236},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7041706442832947},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6110941767692566},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.5693857669830322},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5619687438011169},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5446521639823914},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5132675170898438},{"id":"https://openalex.org/C114237110","wikidata":"https://www.wikidata.org/wiki/Q114901","display_name":"Gate array","level":3,"score":0.4567365348339081},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.4137859344482422},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.3586537837982178},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1639525294303894},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1379358470439911},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09322202205657959},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332479","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332479","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W133220909","https://openalex.org/W1525734744","https://openalex.org/W2048132103","https://openalex.org/W2102424972","https://openalex.org/W2106776401","https://openalex.org/W2142599417","https://openalex.org/W6605299117","https://openalex.org/W6681246114"],"related_works":["https://openalex.org/W1967938402","https://openalex.org/W2014165129","https://openalex.org/W2367348190","https://openalex.org/W594316872","https://openalex.org/W2831860248","https://openalex.org/W2386041993","https://openalex.org/W2367794224","https://openalex.org/W2072850836","https://openalex.org/W1608572506","https://openalex.org/W2017163657"],"abstract_inverted_index":{"Our":[0],"previous":[1,70],"work":[2],"to":[3,14,64,91,126],"accelerate":[4],"phylogeny":[5,97],"inference":[6],"using":[7],"HW/SW(hardware/software)":[8],"co-design":[9,42,106],"has":[10,122],"recently":[11],"been":[12,60,124],"extended":[13],"a":[15,24,78],"more":[16],"powerful":[17],"embedded":[18,75,109],"computing":[19],"platform.":[20],"In":[21,72,99],"this":[22,100],"platform,":[23],"microprocessor":[25],"is":[26,111],"immersed":[27],"into":[28],"field":[29],"programmable":[30],"gate":[31],"array":[32],"(FPGA)":[33],"fabric":[34],"for":[35,40,96,104,117],"realizing":[36],"an":[37],"effective":[38],"environment":[39],"HW/SW":[41,105],"implementation.":[43],"Significant":[44],"improvements":[45],"in":[46,68,81,107],"data":[47],"transmission":[48],"between":[49],"hardware":[50,83],"and":[51,53,84],"software":[52,85],"higher":[54],"clock":[55],"frequency":[56],"of":[57,129,136],"FPGA":[58,114],"have":[59],"realized":[61],"when":[62],"compared":[63],"the":[65,69,74,102,108,118,134],"JBits":[66],"interface":[67],"design.":[71],"addition,":[73],"platform":[76,110],"provides":[77],"greater":[79],"flexibility":[80],"partitioning":[82],"tasks.":[86],"These":[87],"new":[88],"features":[89],"lead":[90],"much":[92],"faster":[93],"computation":[94],"speed":[95],"inference.":[98],"paper,":[101],"architecture":[103],"presented.":[112],"The":[113],"logic":[115],"design":[116],"tree":[119],"likelihood":[120],"evaluation":[121],"also":[123],"improved":[125],"tackle":[127],"problem":[128],"larger":[130],"scale":[131],"by":[132],"adopting":[133],"idea":[135],"partial":[137],"likelihood.":[138]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
