{"id":"https://openalex.org/W4247138597","doi":"https://doi.org/10.1109/csb.2004.1332465","title":"Figsearch: using maximum entropy classifier to categorize biological figures","display_name":"Figsearch: using maximum entropy classifier to categorize biological figures","publication_year":2004,"publication_date":"2004-11-08","ids":{"openalex":"https://openalex.org/W4247138597","doi":"https://doi.org/10.1109/csb.2004.1332465"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2004.1332465","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332465","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100453123","display_name":"Fang Liu","orcid":"https://orcid.org/0000-0003-3028-5927"},"institutions":[{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Fang Liu","raw_affiliation_strings":["Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I2801049993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028871749","display_name":"T. Jenssen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087674","display_name":"PubGene (Norway)","ror":"https://ror.org/002jt8031","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210087674"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"T. Jenssen","raw_affiliation_strings":["PubGene AS, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"PubGene AS, Oslo, Norway","institution_ids":["https://openalex.org/I4210087674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028666369","display_name":"V. Nygaard","orcid":null},"institutions":[{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"V. Nygaard","raw_affiliation_strings":["Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I2801049993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036412658","display_name":"J. Sack","orcid":null},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Sack","raw_affiliation_strings":["University of Stanford, Palo Alto, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of Stanford, Palo Alto, CA, USA","institution_ids":["https://openalex.org/I1743320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030628576","display_name":"E. Hovig","orcid":null},"institutions":[{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"E. Hovig","raw_affiliation_strings":["Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I2801049993"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100453123"],"corresponding_institution_ids":["https://openalex.org/I2801049993"],"apc_list":null,"apc_paid":null,"fwci":0.4612,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.66514806,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"456","last_page":"457"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7201697826385498},{"id":"https://openalex.org/keywords/principle-of-maximum-entropy","display_name":"Principle of maximum entropy","score":0.7088111042976379},{"id":"https://openalex.org/keywords/schematic","display_name":"Schematic","score":0.6577733159065247},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.6550102233886719},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5634638071060181},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5404004454612732},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.5233475565910339},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.4949573874473572},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.407194584608078},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.39758408069610596},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36218762397766113}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7201697826385498},{"id":"https://openalex.org/C9679016","wikidata":"https://www.wikidata.org/wiki/Q1417473","display_name":"Principle of maximum entropy","level":2,"score":0.7088111042976379},{"id":"https://openalex.org/C192328126","wikidata":"https://www.wikidata.org/wiki/Q4514647","display_name":"Schematic","level":2,"score":0.6577733159065247},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.6550102233886719},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5634638071060181},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5404004454612732},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.5233475565910339},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.4949573874473572},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.407194584608078},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.39758408069610596},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36218762397766113},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2004.1332465","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2004.1332465","pdf_url":null,"source":{"id":"https://openalex.org/S4363608884","display_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W24170292","https://openalex.org/W2093723065","https://openalex.org/W2106093878","https://openalex.org/W2139259976","https://openalex.org/W4240689716","https://openalex.org/W6600998656","https://openalex.org/W6674070085"],"related_works":["https://openalex.org/W3154683910","https://openalex.org/W1846734616","https://openalex.org/W2359532622","https://openalex.org/W3134543635","https://openalex.org/W2921318524","https://openalex.org/W2377571686","https://openalex.org/W4380988671","https://openalex.org/W1925657225","https://openalex.org/W2288239609","https://openalex.org/W2072518676"],"abstract_inverted_index":{"Figures":[0],"in":[1,21,30,71,115,128,136],"scientific":[2],"papers":[3],"represent":[4],"an":[5,25,61,77,142],"intuitive":[6],"and":[7,40,46,57],"concise":[8],"way":[9],"of":[10,27,54,89,100,103],"knowledge":[11],"presentation.":[12],"With":[13],"more":[14],"attention":[15],"being":[16,81],"paid":[17],"on":[18],"full-text":[19],"mining":[20],"bioinformatics,":[22],"we":[23],"initiated":[24],"effort":[26],"studying":[28],"figures":[29],"full":[31],"articles.":[32],"FigSearch":[33,111],"is":[34,94],"a":[35,98,104,116,123,133],"prototype":[36],"figure":[37,63],"legend":[38],"indexing":[39],"classification":[41],"system,":[42],"using":[43],"both":[44],"text-mining":[45,147],"supervised":[47],"machine":[48],"learning.":[49],"We":[50],"defined":[51],"schematic":[52],"representations":[53],"protein":[55],"interactions":[56],"signaling":[58],"events":[59],"as":[60,80,131,141],"interesting":[62],"type.":[64],"A":[65],"maximum":[66,91],"entropy":[67,92],"classifier":[68],"was":[69],"used":[70],"categorizing":[72],"each":[73],"figure,":[74],"by":[75,119],"assigning":[76],"estimated":[78],"likelihood,":[79],"relevant/non-relevant":[82],"according":[83],"to":[84],"our":[85,108],"definition.":[86],"One":[87],"advantage":[88],"the":[90],"principle":[93],"that":[95],"it":[96],"provides":[97],"probability":[99],"decision,":[101],"instead":[102],"binary":[105],"assignment.":[106],"In":[107],"pilot":[109],"study,":[110],"showed":[112],"satisfactory":[113],"performance":[114],"preliminary":[117],"validation":[118],"domain":[120],"experts.":[121],"Such":[122],"system":[124],"can":[125],"be":[126],"useful":[127],"applications":[129],"such":[130],"for":[132,144],"publisher's":[134],"website,":[135],"bio-picture":[137],"gallery":[138],"constructions,":[139],"or":[140],"aid":[143],"other":[145],"complicated":[146],"projects.":[148]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
