{"id":"https://openalex.org/W2133233318","doi":"https://doi.org/10.1109/csb.2003.1227417","title":"Identifying regulatory signals in DNA-sequences with a nonstatistical approximation approach","display_name":"Identifying regulatory signals in DNA-sequences with a nonstatistical approximation approach","publication_year":2004,"publication_date":"2004-03-23","ids":{"openalex":"https://openalex.org/W2133233318","doi":"https://doi.org/10.1109/csb.2003.1227417","mag":"2133233318"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2003.1227417","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227417","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087720676","display_name":"C.-Q. Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C.-Q. Zhang","raw_affiliation_strings":["Department of Mathematics, West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013648816","display_name":"Y. Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Y. Liu","raw_affiliation_strings":["Lane Department of Computer Science and Elec. Engineering, West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Elec. Engineering, West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014607906","display_name":"Elaine M. Eschen","orcid":"https://orcid.org/0000-0002-1089-5245"},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E.M. Eschen","raw_affiliation_strings":["Lane Department of Computer Science and Elec. Engineering, West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"Lane Department of Computer Science and Elec. Engineering, West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011416551","display_name":"Kejian Wu","orcid":"https://orcid.org/0009-0006-0470-5448"},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Wu","raw_affiliation_strings":["Department of Biology, West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087720676"],"corresponding_institution_ids":["https://openalex.org/I12097938"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11594851,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"262","issue":null,"first_page":"593","last_page":"597"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9348999857902527,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5951701998710632},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5503411889076233},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.549575686454773},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5134152173995972},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.4755282700061798},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.441700279712677},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44057291746139526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30076301097869873},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20765924453735352}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5951701998710632},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5503411889076233},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.549575686454773},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5134152173995972},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.4755282700061798},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.441700279712677},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44057291746139526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30076301097869873},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20765924453735352},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/csb.2003.1227417","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227417","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.403.4202","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.403.4202","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ftp.dec.com/pub/toomany/paper72.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1479863711","https://openalex.org/W1484040084","https://openalex.org/W1558365920","https://openalex.org/W1574303240","https://openalex.org/W1974811277","https://openalex.org/W1990061958","https://openalex.org/W1998300401","https://openalex.org/W2003967338","https://openalex.org/W2011039300","https://openalex.org/W2046601975","https://openalex.org/W2056002855","https://openalex.org/W2087064593","https://openalex.org/W2171177497","https://openalex.org/W2314240464","https://openalex.org/W6628682275","https://openalex.org/W6634263952","https://openalex.org/W6685190908"],"related_works":["https://openalex.org/W24843447","https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2605676258","https://openalex.org/W94193318","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2902352756","https://openalex.org/W2377079823","https://openalex.org/W2073808674"],"abstract_inverted_index":{"The":[0,14],"identification":[1],"of":[2,7,16,48,83,131,146],"regulatory":[3],"signals":[4],"is":[5,93],"one":[6],"the":[8,40,46,49,79,97,125],"most":[9],"challenging":[10],"tasks":[11],"in":[12,30,85,101,108,143],"bioinformatics.":[13],"development":[15],"gene-profiling":[17],"technologies":[18],"now":[19],"makes":[20],"it":[21],"possible":[22],"to":[23,42,52,70,76,140],"obtain":[24],"vast":[25],"data":[26],"on":[27,124],"gene":[28],"expression":[29],"a":[31,64,86,113,136,144],"particular":[32],"organism":[33],"under":[34],"various":[35],"conditions.":[36],"This":[37,90],"has":[38,104],"created":[39],"opportunity":[41],"identify":[43,71],"and":[44,66,117,128],"analyze":[45],"parts":[47],"genome":[50,147],"believed":[51],"be":[53],"responsible":[54],"for":[55,120],"transcription":[56,58],"control-the":[57],"factor":[59],"DNA-binding":[60],"motifs":[61,142],"(TFBMs).":[62],"Developing":[63],"practical":[65],"efficient":[67],"computational":[68],"tool":[69],"TFBMs":[72],"will":[73],"enable":[74],"us":[75],"better":[77],"understand":[78],"interplay":[80],"among":[81],"thousands":[82],"genes":[84],"complex":[87],"eukaryotic":[88],"organism.":[89],"problem,":[91],"which":[92],"mathematically":[94],"formulated":[95],"as":[96],"motif":[98,121],"finding":[99],"problem":[100],"computer":[102],"science,":[103],"been":[105],"studied":[106],"extensively":[107],"recent":[109],"years.":[110],"We":[111],"develop":[112],"new":[114],"mathematical":[115],"model":[116],"approximation":[118,138],"technique":[119],"searching.":[122],"Based":[123],"graph":[126],"theoretic":[127],"geometric":[129],"properties":[130],"this":[132],"approach,":[133],"we":[134],"propose":[135],"nonstatistical":[137],"algorithm":[139],"find":[141],"set":[145],"sequences.":[148]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
