{"id":"https://openalex.org/W1600160041","doi":"https://doi.org/10.1109/csb.2003.1227416","title":"The SCP and compressed domain analysis of biological sequences","display_name":"The SCP and compressed domain analysis of biological sequences","publication_year":2004,"publication_date":"2004-03-30","ids":{"openalex":"https://openalex.org/W1600160041","doi":"https://doi.org/10.1109/csb.2003.1227416","mag":"1600160041"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2003.1227416","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085141731","display_name":"Donald Adjeroh","orcid":"https://orcid.org/0000-0002-7982-4744"},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Adjeroh","raw_affiliation_strings":["Lane Department of Compiter Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA","Dept. of Comput. Sci. & Electr. Eng., West Virginia Univ., Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"Lane Department of Compiter Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Electr. Eng., West Virginia Univ., Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5115806505","display_name":"Jianan Feng","orcid":"https://orcid.org/0009-0009-5856-7927"},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Feng","raw_affiliation_strings":["Lane Department of Compiter Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA","Dept. of Comput. Sci. & Electr. Eng., West Virginia Univ., Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"Lane Department of Compiter Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Electr. Eng., West Virginia Univ., Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5085141731"],"corresponding_institution_ids":["https://openalex.org/I12097938"],"apc_list":null,"apc_paid":null,"fwci":1.3864,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.84336056,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"88","issue":null,"first_page":"587","last_page":"592"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7275928258895874},{"id":"https://openalex.org/keywords/sigma","display_name":"Sigma","score":0.7265724539756775},{"id":"https://openalex.org/keywords/prefix","display_name":"Prefix","score":0.6883986592292786},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.5067914128303528},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5061342120170593},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5005550384521484},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4956437349319458},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4923287630081177},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.4903281033039093},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.48410212993621826},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4731111228466034},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.4647507071495056},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.37094569206237793},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.35494691133499146},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.17253044247627258},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14245286583900452},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10010889172554016}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7275928258895874},{"id":"https://openalex.org/C2778049214","wikidata":"https://www.wikidata.org/wiki/Q7512234","display_name":"Sigma","level":2,"score":0.7265724539756775},{"id":"https://openalex.org/C141603448","wikidata":"https://www.wikidata.org/wiki/Q134830","display_name":"Prefix","level":2,"score":0.6883986592292786},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.5067914128303528},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5061342120170593},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5005550384521484},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4956437349319458},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4923287630081177},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.4903281033039093},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.48410212993621826},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4731111228466034},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.4647507071495056},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.37094569206237793},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.35494691133499146},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.17253044247627258},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14245286583900452},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10010889172554016},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/csb.2003.1227416","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.403.7506","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.403.7506","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ftp.dec.com/pub/toomany/paper146.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1492127831","https://openalex.org/W1510807444","https://openalex.org/W1578516052","https://openalex.org/W1588488206","https://openalex.org/W1856495715","https://openalex.org/W1970231722","https://openalex.org/W1980569719","https://openalex.org/W1990061958","https://openalex.org/W1995081082","https://openalex.org/W1998518625","https://openalex.org/W2009570821","https://openalex.org/W2013849299","https://openalex.org/W2019724649","https://openalex.org/W2038180954","https://openalex.org/W2041564485","https://openalex.org/W2067787802","https://openalex.org/W2077592719","https://openalex.org/W2108278098","https://openalex.org/W2115824344","https://openalex.org/W2115898638","https://openalex.org/W2117953160","https://openalex.org/W2121252285","https://openalex.org/W2124871568","https://openalex.org/W2137886825","https://openalex.org/W2148099726","https://openalex.org/W2152331922","https://openalex.org/W2157269748","https://openalex.org/W2158322625","https://openalex.org/W2158874082","https://openalex.org/W2161488606","https://openalex.org/W2234011371","https://openalex.org/W3214380909","https://openalex.org/W4245668478","https://openalex.org/W4246382215","https://openalex.org/W6630503602","https://openalex.org/W6645321515","https://openalex.org/W6677517720","https://openalex.org/W6683504902"],"related_works":["https://openalex.org/W3196321793","https://openalex.org/W3080705045","https://openalex.org/W2385527937","https://openalex.org/W2005880840","https://openalex.org/W4385305499","https://openalex.org/W3173108628","https://openalex.org/W2507465767","https://openalex.org/W1967080779","https://openalex.org/W2612632602","https://openalex.org/W2321805087"],"abstract_inverted_index":{"We":[0,82],"introduce":[1],"the":[2,5,17,31,60,63,70,78,87,90],"SCP":[3,32,80,88],"-":[4],"sorted":[6],"common":[7],"prefix,":[8],"and":[9,49,74],"study":[10],"some":[11],"of":[12,24,45,62,72,86,92],"its":[13],"properties.":[14],"Based":[15],"on":[16,47],"internal":[18],"representations":[19],"used":[20],"by":[21],"a":[22],"class":[23],"new":[25],"compression":[26],"schemes,":[27],"we":[28],"show":[29],"how":[30],"table":[33],"can":[34],"be":[35],"constructed":[36],"using":[37],"an":[38],"O(u+|":[39],"/spl":[40,52,66],"Sigma/":[41,53,67],"|K/sub":[42],"max/)":[43],"number":[44,71],"comparisons":[46],"average,":[48],"O(u":[50],"|":[51,65,68],"|)":[54],"worst":[55],"case,":[56],"where":[57],"u":[58],"is":[59,69,77],"size":[61],"sequence,":[64],"symbols,":[73],"K/sub":[75],"max/":[76],"maximum":[79],"value.":[81],"describe":[83],"one":[84],"application":[85],"to":[89],"problem":[91],"anchor":[93],"points":[94],"in":[95],"multiple":[96],"sequence":[97],"alignment.":[98]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}