{"id":"https://openalex.org/W1492943375","doi":"https://doi.org/10.1109/csb.2003.1227378","title":"PTC: an interactive tool for phylogenetic tree construction","display_name":"PTC: an interactive tool for phylogenetic tree construction","publication_year":2004,"publication_date":"2004-03-30","ids":{"openalex":"https://openalex.org/W1492943375","doi":"https://doi.org/10.1109/csb.2003.1227378","mag":"1492943375"},"language":"en","primary_location":{"id":"doi:10.1109/csb.2003.1227378","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227378","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072545897","display_name":"Caixia Yang","orcid":"https://orcid.org/0000-0002-0574-2404"},"institutions":[{"id":"https://openalex.org/I51504820","display_name":"San Jose State University","ror":"https://ror.org/04qyvz380","country_code":"US","type":"education","lineage":["https://openalex.org/I51504820"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C. Yang","raw_affiliation_strings":["Department of Computer Science, San Jose State University Foundation, USA","Department of Computer Science, San Jose State Univ., CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, San Jose State University Foundation, USA","institution_ids":["https://openalex.org/I51504820"]},{"raw_affiliation_string":"Department of Computer Science, San Jose State Univ., CA, USA","institution_ids":["https://openalex.org/I51504820"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109849624","display_name":"Sami Khuri","orcid":null},"institutions":[{"id":"https://openalex.org/I51504820","display_name":"San Jose State University","ror":"https://ror.org/04qyvz380","country_code":"US","type":"education","lineage":["https://openalex.org/I51504820"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Khuri","raw_affiliation_strings":["Department of Computer Science, San Jose State University Foundation, USA","Department of Computer Science, San Jose State Univ., CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, San Jose State University Foundation, USA","institution_ids":["https://openalex.org/I51504820"]},{"raw_affiliation_string":"Department of Computer Science, San Jose State Univ., CA, USA","institution_ids":["https://openalex.org/I51504820"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072545897"],"corresponding_institution_ids":["https://openalex.org/I51504820"],"apc_list":null,"apc_paid":null,"fwci":0.4497,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.72710374,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"476","last_page":"477"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9564999938011169,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9564999938011169,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9563999772071838,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14049","display_name":"Plant and Fungal Species Descriptions","score":0.9549000263214111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.9455891847610474},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.7862237691879272},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6814082264900208},{"id":"https://openalex.org/keywords/maximum-parsimony","display_name":"Maximum parsimony","score":0.6745219230651855},{"id":"https://openalex.org/keywords/computational-phylogenetics","display_name":"Computational phylogenetics","score":0.6613467931747437},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.6411803960800171},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5623530149459839},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4223126769065857},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4147118031978607},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2782878577709198},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23019856214523315},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.19242623448371887},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.10603061318397522},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.049979567527770996}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.9455891847610474},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.7862237691879272},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6814082264900208},{"id":"https://openalex.org/C22799545","wikidata":"https://www.wikidata.org/wiki/Q1805805","display_name":"Maximum parsimony","level":5,"score":0.6745219230651855},{"id":"https://openalex.org/C41168302","wikidata":"https://www.wikidata.org/wiki/Q3772859","display_name":"Computational phylogenetics","level":5,"score":0.6613467931747437},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.6411803960800171},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5623530149459839},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4223126769065857},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4147118031978607},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2782878577709198},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23019856214523315},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.19242623448371887},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.10603061318397522},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.049979567527770996},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/csb.2003.1227378","is_oa":false,"landing_page_url":"https://doi.org/10.1109/csb.2003.1227378","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2252576209","https://openalex.org/W4389053046","https://openalex.org/W2791652447","https://openalex.org/W2120975787","https://openalex.org/W2963820820","https://openalex.org/W4300265711","https://openalex.org/W2520823390","https://openalex.org/W112542519","https://openalex.org/W4238482389","https://openalex.org/W1993276924"],"abstract_inverted_index":{"A":[0],"phylogenetic":[1,23,25],"tree":[2,26],"represents":[3],"the":[4],"evolutionary":[5],"history":[6],"of":[7,10],"a":[8,17],"group":[9,37],"organisms.":[11],"In":[12],"this":[13],"work,":[14],"we":[15],"introduce":[16],"novel":[18],"interactive":[19],"tool":[20],"for":[21],"constructing":[22],"trees,":[24],"construction":[27],"package.":[28],"The":[29],"package":[30],"supports":[31],"four":[32],"well-known":[33],"algorithms,":[34],"unweighted":[35],"pair":[36],"method":[38],"using":[39],"arithmetic":[40],"average,":[41],"neighbor":[42],"joining,":[43],"Fitch":[44],"Margoliash,":[45],"and":[46],"maximum":[47],"parsimony.":[48]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
